Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

RGI

General information

URL: https://riceome.hzau.edu.cn/dev/
Full name: Rice Gene Index
Description: Rice Gene Index offers connections in Asian rice populations. It establishs gene relationship between different accessions, based on de novo annotations and full-length transcripts. And it contains qualitative and quantitative information on transcriptomes across different accessions and tissues.RGI includes 16 accessions, 16 assemblies, and 18 annotations (IRGSP 1.0 genome of Nipponbare includes three annotations).
Year founded: 2023
Last update:
Version: v2.0
Accessibility:
Accessible
Country/Region: China

Contact information

University/Institution: Huazhong Agricultural University
Address: National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan 430070, China
City: Wu han
Province/State: Hu bei
Country/Region: China
Contact name (PI/Team): Jianwei Zhang
Contact email (PI/Helpdesk): jzhang@mail.hzau.edu.cn

Publications

36966359
Rice Gene Index: A comprehensive pan-genome database for comparative and functional genomics of Asian rice. [PMID: 36966359]
Yu Z, Chen Y, Zhou Y, Zhang Y, Li M, Ouyang Y, Chebotarov D, Mauleon R, Zhao H, Xie W, McNally KL, Wing RA, Guo W, Zhang J.
Mol Plant. 2023:16(5) | 31 Citations (from Europe PMC, 2025-12-20)

Ranking

All databases:
990/6895 (85.656%)
Gene genome and annotation:
326/2021 (83.919%)
Genotype phenotype and variation:
131/1005 (87.065%)
Expression:
186/1347 (86.266%)
990
Total Rank
30
Citations
15
z-index

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Record metadata

Created on: 2023-10-18
Curated by:
Yuanyuan Cheng [2023-10-18]