Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

CHOPIN

General information

URL: http://mordred.bioc.cam.ac.uk/chopin/
Full name:
Description: CHOPIN is a web resource for the structural and functional proteome of Mycobacterium tuberculosis.
Year founded: 2015
Last update: NA
Version: V 1.0
Accessibility:
Accessible
Country/Region: United Kingdom

Classification & Tag

Data type:
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: University of Cambridge
Address: Sanger Building,80 Tennis Court Road,Cambridge CB2 1GA,UK
City: Cambridge
Province/State:
Country/Region: United Kingdom
Contact name (PI/Team): Bernardo Ochoa-Monta–o
Contact email (PI/Helpdesk): bernardo@cryst.bioc.cam.ac.uk

Publications

25833954
CHOPIN: a web resource for the structural and functional proteome of Mycobacterium tuberculosis. [PMID: 25833954]
Ochoa-Montaño B, Mohan N, Blundell TL.

Tuberculosis kills more than a million people annually and presents increasingly high levels of resistance against current first line drugs. Structural information about Mycobacterium tuberculosis (Mtb) proteins is a valuable asset for the development of novel drugs and for understanding the biology of the bacterium; however, only about 10% of the ?4000 proteins have had their structures determined experimentally. The CHOPIN database assigns structural domains and generates homology models for 2911 sequences, corresponding to ?73% of the proteome. A sophisticated pipeline allows multiple models to be created using conformational states characteristic of different oligomeric states and ligand binding, such that the models reflect various functional states of the proteins. Additionally, CHOPIN includes structural analyses of mutations potentially associated with drug resistance. Results are made available at the web interface, which also serves as an automatically updated repository of all published Mtb experimental structures. Its RESTful interface allows direct and flexible access to structures and metadata via intuitive URLs, enabling easy programmatic use of the models. © The Author(s) 2015. Published by Oxford University Press.

Database (Oxford). 2015:2015() | 20 Citations (from Europe PMC, 2025-12-13)

Ranking

All databases:
3984/6895 (42.234%)
Structure:
558/967 (42.399%)
3984
Total Rank
20
Citations
2
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Record metadata

Created on: 2015-06-20
Curated by:
Mengwei Li [2016-03-31]
Mengwei Li [2015-12-02]
Mengwei Li [2015-06-29]
Mengwei Li [2015-06-27]