Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

Cis-Cardio

General information

URL: http://www.licpathway.net/Cis-Cardio/index
Full name: Cis-Cardio
Description: Cis-Cardio is a comprehensive web server designed to catalog and analyze cardiovascular-related cis-regulatory elements. It includes 45,382,361 genomic regions from 1,013 human and mouse epigenetic datasets such as ATAC-seq, DNase-seq, Histone ChIP-seq, TF/TcoF ChIP-seq, RNA polymerase ChIP-seq, and Cohesin ChIP-seq.
Year founded: 2023
Last update: 2023-07-27
Version: v1.0
Accessibility:
Accessible
Country/Region: China

Contact information

University/Institution: University of South China
Address: Hengyang, Hunan 421001, China
City: Hengyang
Province/State: Hunan
Country/Region: China
Contact name (PI/Team): Huifang Tang
Contact email (PI/Helpdesk): tanghuifang999@163.com

Publications

37637211
-Cardio: A comprehensive analysis platform for cardiovascular-relavant regulation in human and mouse. [PMID: 37637211]
Chao Song, Yuexin Zhang, Hong Huang, Yuezhu Wang, Xilong Zhao, Guorui Zhang, Mingxue Yin, Chenchen Feng, Qiuyu Wang, Fengcui Qian, Desi Shang, Jian Zhang, Jiaqi Liu, Chunquan Li, Huifang Tang

-regulatory elements are important molecular switches in controlling gene expression and are regarded as determinant hubs in the transcriptional regulatory network. Collection and processing of large-scale -regulatory data are urgent to decipher the potential mechanisms of cardiovascular diseases from a -regulatory element aspect. Here, we developed a novel web server, -Cardio, which aims to document a large number of available cardiovascular-related -regulatory data and to provide analysis for unveiling the comprehensive mechanisms at a -regulation level. The current version of -Cardio catalogs a total of 45,382,361 genomic regions from 1,013 human and mouse epigenetic datasets, including ATAC-seq, DNase-seq, Histone ChIP-seq, TF/TcoF ChIP-seq, RNA polymerase ChIP-seq, and Cohesin ChIP-seq. Importantly, -Cardio provides six analysis tools, including region overlap analysis, element upstream/downstream analysis, transcription regulator enrichment analysis, variant interpretation, and protein-protein interaction-based co-regulatory analysis. Additionally, -Cardio provides detailed and abundant (epi-) genetic annotations in -regulatory regions, such as super-enhancers, enhancers, transcription factor binding sites (TFBSs), methylation sites, common SNPs, risk SNPs, expression quantitative trait loci (eQTLs), motifs, DNase I hypersensitive sites (DHSs), and 3D chromatin interactions. In summary, -Cardio is a valuable resource for elucidating and analyzing regulatory cues of cardiovascular-specific -regulatory elements. The platform is freely available at http://www.licpathway.net/Cis-Cardio/index.html.

Mol Ther Nucleic Acids. 2023:33() | 3 Citations (from Europe PMC, 2025-12-20)

Ranking

All databases:
4629/6895 (32.879%)
Gene genome and annotation:
1406/2021 (30.48%)
Health and medicine:
1173/1738 (32.566%)
Genotype phenotype and variation:
667/1005 (33.731%)
4629
Total Rank
3
Citations
1.5
z-index

Community reviews

Not Rated
Data quality & quantity:
Content organization & presentation
System accessibility & reliability:

Word cloud

Related Databases

Citing
Cited by

Record metadata

Created on: 2024-07-16
Curated by:
Wenzhuo Cheng [2024-08-27]
Shiting Wang [2024-07-25]
shaosen zhang [2024-07-16]