Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

EV-COMM

General information

URL: http://sdc.iue.ac.cn/evs/list
Full name: EV mediated communication
Description: EV-COMM is a comprehensive database that compiles records of extracellular vesicle (EV)-mediated interactions, including information on donor and recipient cells or species. The database includes 1481 records, detailing 971 cell-cell interactions across more than 40 tissues/organs and 510 cross-species interactions.
Year founded: 2024
Last update: 2024-04-21
Version: v1.0
Accessibility:
Accessible
Country/Region: China

Contact information

University/Institution: Institute of Urban Environment, Chinese Academy of Sciences
Address:
City:
Province/State:
Country/Region: China
Contact name (PI/Team): Qiansheng Huang
Contact email (PI/Helpdesk): qshuang@iue.ac.cn

Publications

38644519
EV-COMM: A database of interspecies and intercellular interactions mediated by extracellular vesicles. [PMID: 38644519]
Jingyu Chen, Jing-Jing Lin, Weiyi Wang, Haining Huang, Zhizhen Pan, Guozhu Ye, Sijun Dong, Yi Lin, Congtian Lin, Qiansheng Huang

Intra- and inter-organismal interactions play a crucial role in the maintenance and function of individuals, as well as communities. Extracellular vesicles (EVs) have been identified as effective mediators for the communication both within and between species. They can carry and transport molecular cargoes to transmit biological messages. Several databases (ExoBCD, ExoCarta, EVpedia, EV-TRACK, Vesiclepedia) complied the cargoes information including DNA, RNA, protein, lipid and metabolite associated with EVs. Databases that refer to the complete records on both donor and recipient information are warranted to facilitate the understanding of the interaction across cells and species. In this study, we developed a database that compiled the records equipped with a structured process of EV-mediated interaction. The sources of donor and recipient were classified by cell type, tissues/organs and species, thus providing an extended knowledge of cell-cell, species-species interaction. The isolation and identification methods were presented for assessing the quality of EVs. Information on functional cargoes was included, where microRNA was linked to a prediction server to broaden its potential effects. Physiological and pathological context was marked to show the environment where EVs functioned. At present, a total of 1481 data records in our database, including 971 cell-cell interactions belonging to more than 40 different tissues/organs, and 510 cross-species records. The database provides a web interface to browse, search, visualize and download the interaction records. Users can search for interactions by selecting the context of interest or specific cells/species types, as well as functional cargoes. To the best of our knowledge, the database is the first comprehensive database focusing on interactions between donor and recipient cells or species mediated by EVs, serving as a convenient tool to explore and validate interactions. The Database, shorten as EV-COMM (EV mediated communication) is freely available at http://sdc.iue.ac.cn/evs/list/ and will be continuously updated.

J Extracell Vesicles. 2024:13(4) | 4 Citations (from Europe PMC, 2025-12-13)

Ranking

All databases:
3340/6895 (51.574%)
Gene genome and annotation:
1032/2021 (48.986%)
Interaction:
620/1194 (48.157%)
Health and medicine:
831/1738 (52.244%)
3340
Total Rank
3
Citations
3
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Record metadata

Created on: 2024-07-16
Curated by:
Wenzhuo Cheng [2024-08-27]
Shiting Wang [2024-07-25]
Shiting Wang [2024-07-16]