Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

Drying without dying

General information

URL: http://desiccation.novogene.com
Full name:
Description: It contains a total of 16 VDT-related plant genomes (including 10 mosses) and incorporates 10 genomes that are closely related to VDT plants. The database features bioinformatic tools, such as blast and homologous cluster search, sequence retrieval, Gene Ontology term and metabolic pathway enrichment statistics, expression profiling, co-expression network extraction, and JBrowser exploration for each genome
Year founded: 2023
Last update: 2023-12-18
Version: v1.0
Accessibility:
Accessible
Country/Region: China

Contact information

University/Institution: Xinjiang Institute of Ecology and Geography
Address: Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China.
City:
Province/State:
Country/Region: China
Contact name (PI/Team): Daoyuan Zhang
Contact email (PI/Helpdesk): zhangdy@ms.xjb.ac.cn

Publications

38109500
Drying without dying: A genome database for desiccation-tolerant plants and evolution of desiccation tolerance. [PMID: 38109500]
Bei Gao, Xiaoshuang Li, Yuqing Liang, Moxian Chen, Huiliang Liu, Yinggao Liu, Jiancheng Wang, Jianhua Zhang, Yuanming Zhang, Melvin J Oliver, Daoyuan Zhang

Desiccation is typically fatal, but a small number of land plants have evolved vegetative desiccation tolerance (VDT), allowing them to dry without dying through a process called anhydrobiosis. Advances in sequencing technologies have enabled the investigation of genomes for desiccation-tolerant plants over the past decade. However, a dedicated and integrated database for these valuable genomic resources has been lacking. Our prolonged interest in VDT plant genomes motivated us to create the "Drying without Dying" database, which contains a total of 16 VDT-related plant genomes (including 10 mosses) and incorporates 10 genomes that are closely related to VDT plants. The database features bioinformatic tools, such as blast and homologous cluster search, sequence retrieval, Gene Ontology term and metabolic pathway enrichment statistics, expression profiling, co-expression network extraction, and JBrowser exploration for each genome. To demonstrate its utility, we conducted tailored PFAM family statistical analyses, and we discovered that the drought-responsive ABA transporter AWPM-19 family is significantly tandemly duplicated in all bryophytes but rarely so in tracheophytes. Transcriptomic investigations also revealed that response patterns following desiccation diverged between bryophytes and angiosperms. Combined, the analyses provided genomic and transcriptomic evidence supporting a possible divergence and lineage-specific evolution of VDT in plants. The database can be accessed at http://desiccation.novogene.com. We expect this initial release of the "Drying without Dying" plant genome database will facilitate future discovery of VDT genetic resources.

Plant Physiol. 2024:194(4) | 8 Citations (from Europe PMC, 2025-12-20)

Ranking

All databases:
1913/6895 (72.27%)
Gene genome and annotation:
597/2021 (70.51%)
Pathway:
120/451 (73.614%)
Standard ontology and nomenclature:
85/238 (64.706%)
1913
Total Rank
7
Citations
7
z-index

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Record metadata

Created on: 2024-07-16
Curated by:
Wenzhuo Cheng [2024-08-27]
Wenzhuo Cheng [2024-07-23]
Haochen Liu [2024-07-16]