Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

RVdb

General information

URL: http://rvdb.mgc.ac.cn
Full name: rhinovirus database
Description: RVdb is a comprehensive rhinovirus database and analysis platform integrating many online analysis functions. It includes web-based tools for sequence annotation, multiple sequence alignment, phylogenetic analysis, and serotyping, aiding virologists and epidemiologists in tracking RV-related infectious diseases.
Year founded: 2023
Last update: 2024
Version: v1.0
Accessibility:
Accessible
Country/Region: China

Classification & Tag

Data type:
RNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: Chinese Academy of Medical Sciences and Peking Union Medical College
Address:
City: Beijing
Province/State: Beijing
Country/Region: China
Contact name (PI/Team): Fan Yang
Contact email (PI/Helpdesk): ymf129@163.com

Publications

37930838
RVdb: a comprehensive resource and analysis platform for rhinovirus research. [PMID: 37930838]
Peng Zhao, Siyu Zhou, Panpan Xu, Haoxiang Su, Yelin Han, Jie Dong, Hongtao Sui, Xin Li, Yongfeng Hu, Zhiqiang Wu, Bo Liu, Ting Zhang, Fan Yang

Rhinovirus (RV), a prominent causative agent of both upper and lower respiratory diseases, ranks among the most prevalent human respiratory viruses. RV infections are associated with various illnesses, including colds, asthma exacerbations, croup and pneumonia, imposing significant and extended societal burdens. Characterized by a high mutation rate and genomic diversity, RV displays a diverse serological landscape, encompassing a total of 174 serotypes identified to date. Understanding RV genetic diversity is crucial for epidemiological surveillance and investigation of respiratory diseases. This study introduces a comprehensive and high-quality RV data resource, designated RVdb (http://rvdb.mgc.ac.cn), covering 26 909 currently identified RV strains, along with RV-related sequences, 3D protein structures and publications. Furthermore, this resource features a suite of web-based utilities optimized for easy browsing and searching, as well as automatic sequence annotation, multiple sequence alignment (MSA), phylogenetic tree construction, RVdb BLAST and a serotyping pipeline. Equipped with a user-friendly interface and integrated online bioinformatics tools, RVdb provides a convenient and powerful platform on which to analyse the genetic characteristics of RVs. Additionally, RVdb also supports the efforts of virologists and epidemiologists to monitor and trace both existing and emerging RV-related infectious conditions in a public health context.

Nucleic Acids Res. 2024:52(D1) | 8 Citations (from Europe PMC, 2026-03-28)

Ranking

All databases:
3476/6932 (49.87%)
Interaction:
640/1200 (46.75%)
Gene genome and annotation:
1076/2039 (47.278%)
3476
Total Rank
5
Citations
2.5
z-index

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Record metadata

Created on: 2024-07-16
Curated by:
Miaomiao Wang [2024-08-30]
Haochen Liu [2024-07-18]
zheng luo [2024-07-16]