Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

Genevar

General information

URL: http://www.sanger.ac.uk/resources/software/genevar
Full name: GENe Expression VARiation
Description: Genevar (GENe Expression VARiation) is a database and Java tool designed to integrate multiple datasets, and provides analysis and visualization of associations between sequence variation and gene expression.
Year founded: 2010
Last update: 2010-10-01
Version:
Accessibility:
Unaccessible
Country/Region: United Kingdom

Classification & Tag

Data type:
DNA
Data object:
NA
Database category:
Major species:
NA
Keywords:

Contact information

University/Institution: Wellcome Sanger Institute
Address: Hinxton, Cambridge CB10 1HH, UK
City: Hinxton
Province/State: Cambridge
Country/Region: United Kingdom
Contact name (PI/Team): Dermitzakis ET.
Contact email (PI/Helpdesk): emmanouil.dermitzakis@unige.ch

Publications

20702402
Genevar: a database and Java application for the analysis and visualization of SNP-gene associations in eQTL studies. [PMID: 20702402]
Yang TP, Beazley C, Montgomery SB, Dimas AS, Gutierrez-Arcelus M, Stranger BE, Deloukas P, Dermitzakis ET.

Genevar (GENe Expression VARiation) is a database and Java tool designed to integrate multiple datasets, and provides analysis and visualization of associations between sequence variation and gene expression. Genevar allows researchers to investigate expression quantitative trait loci (eQTL) associations within a gene locus of interest in real time. The database and application can be installed on a standard computer in database mode and, in addition, on a server to share discoveries among affiliations or the broader community over the Internet via web services protocols. http://www.sanger.ac.uk/resources/software/genevar.

Bioinformatics. 2010:26(19) | 245 Citations (from Europe PMC, 2025-12-13)

Ranking

All databases:
923/6895 (86.628%)
Expression:
169/1347 (87.528%)
Genotype phenotype and variation:
123/1005 (87.861%)
923
Total Rank
241
Citations
16.067
z-index

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Not Rated
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Record metadata

Created on: 2015-06-30
Curated by:
Nashaiman Pervaiz [2018-12-28]
Lina Ma [2018-06-01]
Zhang Zhang [2016-03-29]
Lin Liu [2016-03-26]
Lin Liu [2016-02-28]
Mengwei Li [2016-02-20]
Lin Liu [2015-12-29]
Jian Sang [2015-12-05]