Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

Sinbase

General information

URL: http://www.ocri-genomics.org/Sinbase/
Full name: Sesamum indicum database
Description: An integrated database to study genomics, genetics and comparative genomics in Sesamum indicum.
Year founded: 2015
Last update: 2015-01-01
Version: v1.0
Accessibility:
Accessible
Country/Region: China

Classification & Tag

Data type:
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: Chinese Academy of Agricultural Sciences
Address: Wuhan China
City: Beijing
Province/State: Beijing
Country/Region: China
Contact name (PI/Team): Xiurong Zhang
Contact email (PI/Helpdesk): zhangxr@oilcrops.cn

Publications

25480115
Sinbase: an integrated database to study genomics, genetics and comparative genomics in Sesamum indicum. [PMID: 25480115]
Wang L, Yu J, Li D, Zhang X.

Sesame (Sesamum indicum L.) is an ancient and important oilseed crop grown widely in tropical and subtropical areas. It belongs to the gigantic order Lamiales, which includes many well-known or economically important species, such as olive (Olea europaea), leonurus (Leonurus japonicus) and lavender (Lavandula spica), many of which have important pharmacological properties. Despite their importance, genetic and genomic analyses on these species have been insufficient due to a lack of reference genome information. The now available S. indicum genome will provide an unprecedented opportunity for studying both S. indicum genetic traits and comparative genomics. To deliver S. indicum genomic information to the worldwide research community, we designed Sinbase, a web-based database with comprehensive sesame genomic, genetic and comparative genomic information. Sinbase includes sequences of assembled sesame pseudomolecular chromosomes, protein-coding genes (27,148), transposable elements (372,167) and non-coding RNAs (1,748). In particular, Sinbase provides unique and valuable information on colinear regions with various plant genomes, including Arabidopsis thaliana, Glycine max, Vitis vinifera and Solanum lycopersicum. Sinbase also provides a useful search function and data mining tools, including a keyword search and local BLAST service. Sinbase will be updated regularly with new features, improvements to genome annotation and new genomic sequences, and is freely accessible at http://ocri-genomics.org/Sinbase/. © The Author 2014. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Plant Cell Physiol. 2015:56(1) | 29 Citations (from Europe PMC, 2025-12-13)

Ranking

All databases:
3401/6895 (50.689%)
Gene genome and annotation:
1052/2021 (47.996%)
3401
Total Rank
29
Citations
2.9
z-index

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Record metadata

Created on: 2015-06-30
Curated by:
Lina Ma [2018-07-03]
Zhang Zhang [2016-06-14]
Lin Xia [2016-03-28]
Mengwei Li [2016-02-20]