Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

AMDB

General information

URL: https://amdb.online
Full name: Animal Metabolite Database
Description: Animal metabolite database (AMDB) is a freely accessible database on the quantitative content of metabolites in the tissues of animals. The AMDB is designed to ease browsing and comparing the quantitative metabolomics data and the raw NMR and MS data, as well as the sample metadata.
Year founded: 2023
Last update:
Version: v1.0
Accessibility:
Accessible
Country/Region: Russian Federation

Classification & Tag

Data type:
Data object:
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Major species:
Keywords:

Contact information

University/Institution: the International Tomography Center, Siberian Branch of the Russian Academy of Sciences
Address: Akademgorodok, Novosibirsk, Russia
City:
Province/State: Novosibirsk
Country/Region: Russian Federation
Contact name (PI/Team): AMDB
Contact email (PI/Helpdesk): amdb@tomo.nsc.ru

Publications

37887413
Animal Metabolite Database: Metabolite Concentrations in Animal Tissues and Convenient Comparison of Quantitative Metabolomic Data. [PMID: 37887413]
Vadim V Yanshole, Arsenty D Melnikov, Lyudmila V Yanshole, Ekaterina A Zelentsova, Olga A Snytnikova, Nataliya A Osik, Maxim V Fomenko, Ekaterina D Savina, Anastasia V Kalinina, Kirill A Sharshov, Nikita A Dubovitskiy, Mikhail S Kobtsev, Anatolii A Zaikovskii, Sofia S Mariasina, Yuri P Tsentalovich

The Animal Metabolite Database (AMDB, https://amdb.online) is a freely accessible database with built-in statistical analysis tools, allowing one to browse and compare quantitative metabolomics data and raw NMR and MS data, as well as sample metadata, with a focus on the metabolite concentrations rather than on the raw data itself. AMDB also functions as a platform for the metabolomics community, providing convenient deposition and exchange of quantitative metabolomic data. To date, the majority of the data in AMDB relate to the metabolite content of the eye lens and blood of vertebrates, primarily wild species from Siberia, Russia and laboratory rodents. However, data on other tissues (muscle, heart, liver, brain, and more) are also present, and the list of species and tissues is constantly growing. Typically, every sample in AMDB contains concentrations of 60-90 of the most abundant metabolites, provided in nanomoles per gram of wet tissue weight (nmol/g). We believe that AMDB will become a widely used tool in the community, as typical metabolite baseline concentrations in tissues of animal models will aid in a wide variety of fundamental and applied scientific fields, including, but not limited to, animal modeling of human diseases, assessment of medical formulations, and evolutionary and environmental studies.

Metabolites. 2023:13(10) | 5 Citations (from Europe PMC, 2025-12-13)

Ranking

All databases:
2623/6895 (61.972%)
Expression:
767/1347 (43.133%)
Interaction:
685/1194 (42.714%)
Pathway:
230/451 (49.224%)
2623
Total Rank
5
Citations
2.5
z-index

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Record metadata

Created on: 2024-07-16
Curated by:
Miaomiao Wang [2024-08-24]
shaosen zhang [2024-07-23]
shaosen zhang [2024-07-18]
zheng luo [2024-07-16]