Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

STRchive

General information

URL: http://strchive.org
Full name: short tandem repeat archive
Description: STRchive is a dynamic, integrated database that consolidates information on disease-associated tandem repeat (TR) loci—including short tandem repeats (STRs) and variable number tandem repeats (VNTRs)—from research literature, clinical resources, and large-scale genomic datasets, facilitating the interpretation of TR variants in human disease.
Year founded: 2025
Last update: 2025-03-26
Version: v1.0
Accessibility:
Accessible
Country/Region: United States

Classification & Tag

Data type:
DNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: University of Colorado Anschutz Medical Campus
Address:
City: Aurora
Province/State: Colorado
Country/Region: United States
Contact name (PI/Team): Harriet Dashnow
Contact email (PI/Helpdesk): harriet.dashnow@cuanschutz.edu

Publications

40140942
STRchive: a dynamic resource detailing population-level and locus-specific insights at tandem repeat disease loci. [PMID: 40140942]
Laurel Hiatt, Ben Weisburd, Egor Dolzhenko, Vincent Rubinetti, Akshay K Avvaru, Grace E VanNoy, Nehir Edibe Kurtas, Heidi L Rehm, Aaron R Quinlan, Harriet Dashnow

Approximately 8% of the human genome consists of repetitive elements called tandem repeats (TRs): short tandem repeats (STRs) of 1-6 bp motifs and variable number tandem repeats (VNTRs) of 7 + bp motifs. TR variants contribute to several dozen monogenic diseases but remain understudied and enigmatic. It remains comparatively challenging to interpret the clinical significance of TR variants, particularly relative to single nucleotide variants. We present STRchive ( http://strchive.org/ ), a dynamic resource consolidating information on TR disease loci from the research literature, up-to-date clinical resources, and large-scale genomic databases, streamlining TR variant interpretation at disease-associated loci.

Genome Med. 2025:17(1) | 7 Citations (from Europe PMC, 2026-04-11)

Ranking

All databases:
2590/6932 (62.651%)
Gene genome and annotation:
803/2039 (60.667%)
Genotype phenotype and variation:
379/1012 (62.648%)
Literature:
238/577 (58.925%)
Metadata:
258/723 (64.454%)
2590
Total Rank
4
Citations
4
z-index

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Record metadata

Created on: 2025-06-28
Curated by:
shaosen zhang [2025-08-04]
zheng luo [2025-07-16]
zheng luo [2025-07-07]
shaosen zhang [2025-06-28]