Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

AbAMPdb

General information

URL: https://abampdb.mgbio.tech
Full name: Acinetobacter baumannii Antimicrobial-Peptide DataBase
Description: AbAMPdb is a manually curated repository of 300 anti-A. baumannii peptides—250 experimentally validated and 50 rationally mutated variants—accompanied by 3-D AlphaFold models and 5 000 peptide–target docking complexes, plus physicochemical descriptors and residue-level interaction plots to aid drug-design against this WHO-priority pathogen.
Year founded: 2024
Last update: 2024-10-12
Version: v1.0
Accessibility:
Accessible
Country/Region: Pakistan

Classification & Tag

Data type:
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: National University of Sciences & Technology
Address:
City: Islamabad
Province/State: Islamabad
Country/Region: Pakistan
Contact name (PI/Team): Amjad Ali
Contact email (PI/Helpdesk): amjad.ali@asab.nust.edu.pk

Publications

39395188
AbAMPdb: a database of Acinetobacter baumannii specific antimicrobial peptides. [PMID: 39395188]
Farha Anwer, Ahmad Navid, Fiza Faiz, Uzair Haider, Samavi Nasir, Muhammad Farooq, Maryam Zahra, Anosh Bano, Hafiza Hira Bashir, Madiha Ahmad, Syeda Aleena Abbas, Shah E Room, Muhammad Tariq Saeed, Amjad Ali

Acinetobacter baumannii has emerged as a prominent nosocomial pathogen, exhibiting a progressive rise in resistance to therapeutic interventions. This rise in resistance calls for alternative strategies. Here, we propose an alternative yet specialized resource on antimicrobial peptides (AMPs) against A. baumannii. Database 'AbAMPdb' is the manually curated collection of 300 entries containing the 250 experimental AMP sequences and 50 corresponding synthetic or mutated AMP sequences. The mutated sequences were modified with reported amino acid substitutions intended for decreasing the toxicity and increasing the antimicrobial potency. AbAMPdb also provides 3D models of all 300 AMPs, comprising 250 natural and 50 synthetic or mutated AMPs. Moreover, the database offers docked complexes comprising 5000 AMPs and their corresponding A. baumannii target proteins. These complexes, accessible in Protein Data Bank format, enable the 2D visualization of the interacting amino acid residues. We are confident that this comprehensive resource furnishes vital information concerning AMPs, encompassing their docking interactions with virulence factors and antibiotic resistance proteins of A. baumannii. To enhance clinical relevance, the characterized AMPs could undergo further investigation both in vitro and in vivo. Database URL: https://abampdb.mgbio.tech/.

Database (Oxford). 2024:2024() | 3 Citations (from Europe PMC, 2026-03-28)

Ranking

All databases:
4473/6932 (35.488%)
Interaction:
822/1200 (31.583%)
Health and medicine:
1126/1755 (35.897%)
4473
Total Rank
3
Citations
1.5
z-index

Community reviews

Not Rated
Data quality & quantity:
Content organization & presentation
System accessibility & reliability:

Word cloud

Related Databases

Citing
Cited by

Record metadata

Created on: 2025-06-30
Curated by:
Yuhao Zeng [2025-08-19]
shaosen zhang [2025-07-09]
Zihan Wang [2025-06-30]