Version 1
Usage:
FastEPRR.pl -alnFilePath -format -erStart -erEnd -winLength_aln -stepLength_aln -vcf -winLength_step1 -stepLength_step1 -winDXThreshold -idvlConsidered -qualThreshold -gapFilePath -jobNumber -outputFilePath -outputName
opts:
-alnFilePath             Full path of the alignment file. The file name should end with [.fas|.aln|.phy|.txt]
-format                    1:fasta,2:clustal,3:phylip
-erStart                    A character value indicating the start position from which to estimate the

                                recombination rate.[NULL]
-erEnd                     A character value indicating the end position relative to erStart.[NULL]
-winLength_aln       The size of the sliding-window.[NULL]
-stepLength_aln      The length of the sliding step.[NULL]
-vcf                          Full path of vcf file. The file name shoule end with [.vcf|.gz], only one chromosome.
-winLength_step1   The size of the sliding-window.(kb)[NULL]
-stepLength_step1  The length of the sliding step.(kb)[winLength_step1]
-winDXThreshold     The minimum number of e2+ex for one window.[30]
-idvlConsidered       It indicates which individuals in the input are considered.(";")[all]
-qualThreshold        The threshold of quality.[20]
-gapFilePath            Full path of gap file. The gap file stores the gap information of the input chromosome,

                                and it has specified format.
-jobNumber             The number of jobs which are used to perform estimating in parallel.[1]
-outputFilePath       Full path of output file.
-outputName           Name of output file.