Version 1
Usage:
iMAAPs.pl -name -ind_file -Refpops -Timefile -Jackknife -Mindis -Maxdis -Binsize -Iter -Num_threads -geno -snp
opts:
-name Sample name.
-ind_file Individual notation.
-Refpops Labels for reference populations.
-Timefile Time file for testing the admixture signals.
-Jackknife Whether applied jack knife test.[off]("1" "on" "ON" stands for OPEN. "0" "off" "OFF" stands for CLOSE.)
-Mindis Minimum distance of two WLD bins(in Morgan).[0.0002]
-Maxdis Maximum distance of two WLD bins(in Morgan).[0.3]
-Binsize Bin size of WLD bin(in Morgan).[0.0002]
-Iter Number of iteration to the final fitting results.[100000]
-Num_threads Number of threads used globally.[1]
-geno List of genotype files.(",")
-snp List of snp files.(",")
| -S: | Sample name |
| sample name. |
| -I: | Ind file |
| individual notation. |
| -R: | Refpops |
| labels for reference populations.(separated by commas, such as POP1,POP2) |
| -T: | Timefile |
| time file for testing the admixture signals. |
| -J: | Jackknife |
| whether applied jack knife test.[off]("1" "on" "ON" stands for OPEN. "0" "off" "OFF" stands for CLOSE.) |
| -Min: | Mindis |
| minimum distance of two WLD bins(in Morgan). |
| -Max: | Maxdis |
| maximum distance of two WLD bins(in Morgan). |
| -B: | Binsize |
| bin size of WLD bin(in Morgan). |
| -Iter: | Iter |
| number of iteration to the final fitting results. |
| -N: | Num_threads |
| number of threads used globally. |
| -G: | Geno |
| list of genotype files.(",") |
| -SNP: | SNP |
| list of snp files.(",") |
Evolution Data Analysis
- GeneTree 1.3
- TreeSAAP 3.2
Data visualization
- Bar Chart
- Line Chart
- Histogram Chart
About us
- About us
-
Strategic Priority Research Program of the Chinese Academy of Sciences,Grant No. XDB13000000
Maintained by BIG Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences.