Version 1
Usage:
/share_bio/nas4/leofs/biocloud/script/SSN_construction_code/SSN.pl
-ref -background -sample -pvalue|-threshold -out
opts:
-ref
The expression profile of reference samples
-background
Background network to calculate the deltaPCC of edges based on the network
-sample
The expression profile for the sample to be constructed the SSN
-pvalue
Set the threshold of p-value [0..1], if the -pvalue set 1, all edges will be
outputted to the SSN
-threshold Set the
threshold value of the absolute value of deltaPCC [0..2]
-Ref | Reference sample |
the expression profile of reference samples |
-B | background network |
background network to calculate the deltaPCC of edges based on the network |
-S | Profile for sample |
the expression profile for the sample to be constructed the SSN |
-P | Pvalue |
set the threshold of p-value [0..1], if the -pvalue set 1, all edges will be outputted to the SSN |
-T: | Threshold |
set the threshold value of the absolute value of deltaPCC [0..2] |