Gene Expression Nebulas
A data portal of transcriptomic profiles analyzed by a unified pipeline across multiple species

Gene Expression Nebulas

A data portal of transcriptome profiles across multiple species
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GEND000104
Basic Information Samples Transcriptomic Profiles Visualization

GEND000104: A single-cell transcriptomic map of the human and mouse pancreas reveals inter- and intra-cell population structure

BioProject ID:    PRJNA328774     Original Project ID:    GSE84133    

Strategy:
Species:
Homo sapiens
Tissue:
Healthy Condition:
Cell Number:
Biological Context:
Baseline:
Yes
Genetic:
-
Phenotypic:
Gender
Environmental:
-
Spatial:
Tissue
Temporal:
Age
Quality and Quantity:
RNA Type:
poly(A)+ RNA
Median Mapping Quality:
0.77495
Median Coverage:
10.36
Max Sequencing Length:
54
#Max Replicate:
4

Transcriptomic Profiles

Note:
GENDX:
Gene Expression Profiles
GENDE:
RNA Editing Profiles
GENDS:
Alternative Splicing Profiles
GENDC:
CircRNA Expression Profiles
ID: GENDX000104 Download
Reference Genome: GRCh38 v99
Genome Annotation: GRCh38 v99
Data Processing:
  1. Extraction of cell barcodes: dropTag
  2. Read mapping: STAR v2.7.1a
  3. Data generation: dropEst

Samples

Display Columns
Basic Information:
Sample Characteristic:
Biological Condition:
Experimental Variables:
Protocol:
Sequencing:
Assessing Quality:
Analysis:
GEN Sample ID GEN Sample Name Sample ID Sample Name BioSample ID Sample Accession Experiment Accession Release Date Submission Date Update Date Species Race Ethnicity Age Age Unit Gender Source Name Tissue Cell Type Cell Subtype Cell Line Disease Disease State Development Stage Mutation Phenotype Case Detail Control Detail Growth Protocol Treatment Protocol Extract Protocol Library Construction Protocol Molecule Type Library Layout Strand-Specific Library Strand Spike-In Strategy Platform Instrument Model Cell Number Reads Number Gbases AvgSpotLen1 AvgSpotLen2 Uniq Mapping Rate Multiple Mapping Rate Coverage Rate