e.g., HRA000087; HRA000150
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HRA001330
   HRA001330.xlsx
Title:
Genome-wide investigation of effects of aberrant DNA methylation on the usage of alternative promoters in hepatocellular carcinoma
Release date:
2022-01-04
Description:
In this study, we systematically elaborated the overview usage of promoters in HCC. Different from previous studies concerned with gene expression, our study focused on pre-transcriptional regulation suggest that promoter activity was more effective and conducive for tumorigenesis exploration. Then the correlation between APs activity and methylation status indicated that APs activity could be regulated by the aberrant methylation status.
Data Accessibility:   
Controlled access Request Data
BioProject:
PRJCA006620
Study type:
Disease Study
Disease name:
hepatocellular carcinoma
Data Access Committee

For each controlled access study, there is a corresponding Data Access Committee(DAC) to determine the access permissions. Access to actual data files is not managed by NGDC.


DAC NO.:
HDAC000802
DAC name:
Ximiao He
Contact person:
He Ximiao
Email:
XimiaoHe@hust.edu.cn
Description:
PI of Center for Genomics and Proteomics Research
Individuals & samples
Individual Accession
Individual Name
Gender
Sample Accession
Sample Name
Sample Description
Individual Accession
Individual Name
Gender
Sample Accession
Sample Name
Sample Description
HRI149850GX154044femaleHRS284736GX15404_CAHCC tissue
HRI149850GX154044femaleHRS284737GX15404_CPPara cancer tissue
HRI149851GX157272maleHRS284738GX157272_CAHCC tissue
HRI149851GX157272maleHRS284739GX157272_CPPara cancer tissue
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Files
Request Data
Run accession
Files
Experiment
Experiment title
Platform
Sample
Run accession
Files
Experiment
Experiment title
Platform
Sample
HRR387051HRR387051_f1.fastq.gz (3.27 GB)HRX310792RNA-seq data of GX15404_CAIllumina HiSeq 3000HRS284736 (SAMC1910162)
HRR387051HRR387051_r2.fastq.gz (3.41 GB)HRX310792RNA-seq data of GX15404_CAIllumina HiSeq 3000HRS284736 (SAMC1910162)
HRR387052HRR387052_f1.fastq.gz (3.61 GB)HRX310793RNA-seq data of GX15404_CPIllumina HiSeq 3000HRS284737 (SAMC1910166)
HRR387052HRR387052_r2.fastq.gz (3.75 GB)HRX310793RNA-seq data of GX15404_CPIllumina HiSeq 3000HRS284737 (SAMC1910166)
HRR387053HRR387053_f1.fastq.gz (2.97 GB)HRX310794RNA-seq data of GX157272_CAIllumina HiSeq 3000HRS284738 (SAMC1910169)
HRR387053HRR387053_r2.fastq.gz (3.15 GB)HRX310794RNA-seq data of GX157272_CAIllumina HiSeq 3000HRS284738 (SAMC1910169)
HRR387054HRR387054_f1.fastq.gz (3.39 GB)HRX310795RNA-seq data of GX157272_CPIllumina HiSeq 3000HRS284739 (SAMC1910174)
HRR387054HRR387054_r2.fastq.gz (3.59 GB)HRX310795RNA-seq data of GX157272_CPIllumina HiSeq 3000HRS284739 (SAMC1910174)
HRR387055HRR387055_f1.fastq.gz (24.09 GB)HRX310796WGBS data of GX15404_CAIllumina NovaSeq 6000HRS284736 (SAMC1910162)
HRR387055HRR387055_r2.fastq.gz (24.31 GB)HRX310796WGBS data of GX15404_CAIllumina NovaSeq 6000HRS284736 (SAMC1910162)
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Submitter:   He Ximiao / XimiaoHe@hust.edu.cn
Organization:   Tongji Medical College，Huazhong University of Science & Technology
Submission date:   2021-09-18
Requests:   1