e.g., HRA000087; HRA000150
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HRA003107
   HRA003107.xlsx
Title:
Multi-omics integrative analysis of esophageal squamous carcinoma
Release date:
2022-09-30
Description:
In this study, we performed WGS, WGBS, RNA sequencing, and small RNA sequencing on tumor tissues as well as matched adjacent non-neoplastic tissues from ESCC patients to discover potential molecular subgroups. We present a comprehensive molecular profiling of ESCC with a focus on identifying novel molecular subgroups and functionally altered signaling pathways that may drive tumorigenesis and serve as prognostic or therapeutic signatures.
Data Accessibility:   
Controlled access Request Data
BioProject:
PRJCA004501
Study type:
Disease Study
Disease name:
esophageal cancer
Data Access Committee

For each controlled access study, there is a corresponding Data Access Committee(DAC) to determine the access permissions. Access to actual data files is not managed by NGDC.


DAC NO.:
HDAC000119
DAC name:
ESCC
Contact person:
Liu Zhihua
Email:
liuzh@cicams.ac.cn
Description:
ESCC WGS study
Individuals & samples
Individual Accession
Individual Name
Gender
Sample Accession
Sample Name
Sample Description
Individual Accession
Individual Name
Gender
Sample Accession
Sample Name
Sample Description
HRI281308BDESCC2-1maleHRS449726BDESCC2-1Nadjacent non-neoplastic tissue
HRI281308BDESCC2-1maleHRS449727BDESCC2-1TESCC tissue
HRI281309BDESCC2-2maleHRS449728BDESCC2-2Nadjacent non-neoplastic tissue
HRI281309BDESCC2-2maleHRS449729BDESCC2-2TESCC tissue
HRI281310BDESCC2-3maleHRS449730BDESCC2-3Nadjacent non-neoplastic tissue
HRI281310BDESCC2-3maleHRS449731BDESCC2-3TESCC tissue
HRI281311BDESCC2-4femaleHRS449732BDESCC2-4Nadjacent non-neoplastic tissue
HRI281311BDESCC2-4femaleHRS449733BDESCC2-4TESCC tissue
HRI281312BDESCC2-6femaleHRS449734BDESCC2-6Nadjacent non-neoplastic tissue
HRI281312BDESCC2-6femaleHRS449735BDESCC2-6TESCC tissue
Showing 1 to 10 of 310 rows rows per page
Files
Request Data
Run accession
Files
Experiment
Experiment title
Platform
Sample
Run accession
Files
Experiment
Experiment title
Platform
Sample
HRR757543HRR757543_f1.fastq.gz (28.62 GB)HRX549765WGS of S1Illumina NovaSeq 6000HRS449726 (SAMC1584458)
HRR757543HRR757543_r2.fastq.gz (30.81 GB)HRX549765WGS of S1Illumina NovaSeq 6000HRS449726 (SAMC1584458)
HRR757544HRR757544_f1.fastq.gz (64.08 GB)HRX549766WGS of S2Illumina NovaSeq 6000HRS449727 (SAMC1584462)
HRR757544HRR757544_r2.fastq.gz (71.43 GB)HRX549766WGS of S2Illumina NovaSeq 6000HRS449727 (SAMC1584462)
HRR757545HRR757545_f1.fastq.gz (26.04 GB)HRX549767WGS of S3Illumina NovaSeq 6000HRS449728 (SAMC1584467)
HRR757545HRR757545_r2.fastq.gz (28.90 GB)HRX549767WGS of S3Illumina NovaSeq 6000HRS449728 (SAMC1584467)
HRR757546HRR757546_f1.fastq.gz (68.35 GB)HRX549768WGS of S4Illumina NovaSeq 6000HRS449729 (SAMC1584471)
HRR757546HRR757546_r2.fastq.gz (75.84 GB)HRX549768WGS of S4Illumina NovaSeq 6000HRS449729 (SAMC1584471)
HRR757547HRR757547_f1.fastq.gz (33.82 GB)HRX549769WGS of S5Illumina NovaSeq 6000HRS449730 (SAMC1584475)
HRR757547HRR757547_r2.fastq.gz (37.50 GB)HRX549769WGS of S5Illumina NovaSeq 6000HRS449730 (SAMC1584475)
Showing 1 to 10 of 1152 rows rows per page
Submitter:   Liu Zhihua / liuzh@cicams.ac.cn
Organization:   National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College
Submission date:   2021-02-19
Requests:   26