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CRA001160 Information
Title: GSA-PDAC
BioProject: PRJCA001063 /
Release date: 2019-07-09
Files: 70
File size: 2694.29 GB

Note: 8 runs in this dataset were replaced on 2021-01-14:
Experiment accession Run alias Old run accession New run accession
CRX030762 T1 CRR034496 CRR241805
CRX030763 T2 CRR034497 CRR241798
CRX030764 T3 CRR034498 CRR241799
CRX030768 T7 CRR034502 CRR241800
CRX030774 T13 CRR034508 CRR241801
CRX030780 T19 CRR034514 CRR241802
CRX030781 T20 CRR034515 CRR241804
CRX030784 T23 CRR034518 CRR241803
Publication
Article title
Single-cell RNA-seq highlights intra-tumoral heterogeneity and malignant progression in pancreatic ductal adenocarcinoma.
Journal name
Cell Research
Year
2019
DOI
10.1038/s41422-019-0195-y
PubMed ID
31273297

Article title
Single-cell RNA-seq reveals dynamic change in tumor microenvironment during pancreatic ductal adenocarcinoma malignant progression
Journal name
EBioMedicine
Year
2021
DOI
10.1016/j.ebiom.2021.103315
PubMed ID
33819739

Article title
Radiotherapy orchestrates natural killer cell dependent antitumor immune responses through CXCL8
Journal name
Science Advances
Year
2022
DOI
10.1126/sciadv.abh4050
PubMed ID
35319989

Article title
SPOTlight: seeded NMF regression to deconvolute spatial transcriptomics spots with single-cell transcriptomes
Journal name
Nucleic Acids Research
Year
2021
DOI
10.1093/nar/gkab043
PubMed ID
33544846

Article title
Integrated transcriptional analysis reveals macrophage heterogeneity and macrophage-tumor cell interactions in the progression of pancreatic ductal adenocarcinoma
Journal name
BMC Cancer
Year
2023
DOI
10.1186/s12885-023-10675-y
PubMed ID
36864399

Article title
Stromal Rigidity Stress Accelerates Pancreatic Intraepithelial Neoplasia Progression and Chromosomal Instability via Nuclear Protein Tyrosine Kinase 2 Localization
Journal name
The American Journal of Pathology
Year
2024
DOI
10.1016/j.ajpath.2024.02.023
PubMed ID
38631549

Dataset Downlaod
MetaData:
CRA001160.xlsx
Files:
HTTPS：https://download.cncb.ac.cn/gsa/CRA001160
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FTP：ftp://download.big.ac.cn/gsa/CRA001160

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Experiments & Runs
Experiment accession Title Taxon name Platform Sample accession
CRX030796 N11_single cell RNAseq Homo sapiens Illumina HiSeq X Ten SAMC047106
Run accession Run alias Run data file information
CRR034530 N11 File: CRR034530_f1.fastq.gz
File: CRR034530_r2.fastq.gz
CRX030795 N10_single cell RNAseq Homo sapiens Illumina HiSeq X Ten SAMC047105
Run accession Run alias Run data file information
CRR034529 N10 File: CRR034529_f1.fastq.gz
File: CRR034529_r2.fastq.gz
CRX030794 N9_single cell RNAseq Homo sapiens Illumina HiSeq X Ten SAMC047104
Run accession Run alias Run data file information
CRR034528 N9 File: CRR034528_f1.fastq.gz
File: CRR034528_r2.fastq.gz
CRX030793 N8_single cell RNAseq Homo sapiens Illumina HiSeq X Ten SAMC047103
Run accession Run alias Run data file information
CRR034527 N8 File: CRR034527_f1.fastq.gz
File: CRR034527_r2.fastq.gz
CRX030792 N7_single cell RNAseq Homo sapiens Illumina HiSeq X Ten SAMC047102
Run accession Run alias Run data file information
CRR034526 N7 File: CRR034526_f1.fastq.gz
File: CRR034526_r2.fastq.gz
CRX030791 N6_single cell RNAseq Homo sapiens Illumina HiSeq X Ten SAMC047101
Run accession Run alias Run data file information
CRR034525 N6 File: CRR034525_f1.fastq.gz
File: CRR034525_r2.fastq.gz
CRX030790 N5_single cell RNAseq Homo sapiens Illumina HiSeq X Ten SAMC047100
Run accession Run alias Run data file information
CRR034524 N5 File: CRR034524_f1.fastq.gz
File: CRR034524_r2.fastq.gz
CRX030789 N4_single cell RNAseq Homo sapiens Illumina HiSeq X Ten SAMC047099
Run accession Run alias Run data file information
CRR034523 N4 File: CRR034523_f1.fastq.gz
File: CRR034523_r2.fastq.gz
CRX030788 N3_single cell RNAseq Homo sapiens Illumina HiSeq X Ten SAMC047098
Run accession Run alias Run data file information
CRR034522 N3 File: CRR034522_f1.fastq.gz
File: CRR034522_r2.fastq.gz
CRX030787 N2_single cell RNAseq Homo sapiens Illumina HiSeq X Ten SAMC047097
Run accession Run alias Run data file information
CRR034521 N2 File: CRR034521_f1.fastq.gz
File: CRR034521_r2.fastq.gz
CRX030786 N1_single cell RNAseq Homo sapiens Illumina HiSeq X Ten SAMC047096
Run accession Run alias Run data file information
CRR034520 N1 File: CRR034520_f1.fastq.gz
File: CRR034520_r2.fastq.gz
CRX030785 T24_single cell RNAseq Homo sapiens Illumina HiSeq X Ten SAMC047095
Run accession Run alias Run data file information
CRR034519 T24 File: CRR034519_f1.fastq.gz
File: CRR034519_r2.fastq.gz
CRX030784 T23_single cell RNAseq Homo sapiens Illumina HiSeq X Ten SAMC047094
Run accession Run alias Run data file information
CRR241803 T23 File: CRR241803_f1.fastq.gz
File: CRR241803_r2.fastq.gz
CRX030783 T22_single cell RNAseq Homo sapiens Illumina HiSeq X Ten SAMC047093
Run accession Run alias Run data file information
CRR034517 T22 File: CRR034517_f1.fastq.gz
File: CRR034517_r2.fastq.gz
CRX030782 T21_single cell RNAseq Homo sapiens Illumina HiSeq X Ten SAMC047092
Run accession Run alias Run data file information
CRR034516 T21 File: CRR034516_f1.fastq.gz
File: CRR034516_r2.fastq.gz
CRX030781 T20_single cell RNAseq Homo sapiens Illumina HiSeq X Ten SAMC047091
Run accession Run alias Run data file information
CRR241804 T20 File: CRR241804_f1.fastq.gz
File: CRR241804_r2.fastq.gz
CRX030780 T19_single cell RNAseq Homo sapiens Illumina HiSeq X Ten SAMC047090
Run accession Run alias Run data file information
CRR241802 T19 File: CRR241802_f1.fastq.gz
File: CRR241802_r2.fastq.gz
CRX030779 T18_single cell RNAseq Homo sapiens Illumina HiSeq X Ten SAMC047089
Run accession Run alias Run data file information
CRR034513 T18 File: CRR034513_f1.fastq.gz
File: CRR034513_r2.fastq.gz
CRX030778 T17_single cell RNAseq Homo sapiens Illumina HiSeq X Ten SAMC047088
Run accession Run alias Run data file information
CRR034512 T17 File: CRR034512_f1.fastq.gz
File: CRR034512_r2.fastq.gz
CRX030777 T16_single cell RNAseq Homo sapiens Illumina HiSeq X Ten SAMC047087
Run accession Run alias Run data file information
CRR034511 T16 File: CRR034511_f1.fastq.gz
File: CRR034511_r2.fastq.gz
Submitter:sun baofa (sunbf@big.ac.cn)
Organization:Beijing Institute of Genomics, Chinese Academy of Sciences
Date submitted:2018-10-13