Accession | CRX446365 |
Organism | Mus musculus |
Title | msday21control |
BioProject | PRJCA004238 |
BioSample | SAMC784994 |
Platform | Illumina HiSeq 4000 |
Library |
Library name |
Construction protocol |
Strategy |
Source |
Selection |
Layout |
|
scRNA-seq libraries were generated utilizing the Chromium Single Cell 5’ Library and Gel Bead Kit (10x Genomics, 120237) according to the manufacturer’s instruction with some modifications. In detail, after washing with 0.04% BSA buffer (0.02 g BSA dissolved in 50 ml deionized PBS), lymph node cells of IL-38-treated EAU mice were captured in droplets. Then, reverse transcription, emulsion breaking, barcoded-cDNA purification with Dynabeads, and PCR amplification were conducted step by step. The amplified cDNA was then used for 5’ gene expression library construction. Specifically, fragmenting and end-repair, double-size selection with SPRIselect beads, and sequencing were conducted on 50 ng of amplified cDNA using NovaSeq platform (Illumina NovaSeq6000) to yield 150 bp paired-end reads. |
RNA-Seq |
TRANSCRIPTOMIC SINGLE CELL |
other |
PAIRED
|
|
Processing |
Planned read length (bp) for mate 1: 150
Planned read length (bp) for mate 2: 150
|
Release date | 2022-08-11 |
Run |
Run accession |
Run data file information |
File name | File size (MB) |
CRR505987 |
CRR505987_f1.fastq.gz
CRR505987_r2.fastq.gz
|
2,218.2
8,354.24
|
CRR505988 |
CRR505988_f1.fastq.gz
CRR505988_r2.fastq.gz
|
2,966.3
11,399.11
|
CRR505989 |
CRR505989_f1.fastq.gz
CRR505989_r2.fastq.gz
|
1,976.48
7,539.66
|
CRR505990 |
CRR505990_f1.fastq.gz
CRR505990_r2.fastq.gz
|
2,228.26
8,428.37
|
|
Submitter | Wenru Su (suwr3@mail.sysu.edu.cn) |
Organization | Zhongshan Ophthalmic Center,Sun Yat-sen University |
Date submitted | 2022-05-27 |