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Experiment information
Accession CRX223934
Organism Mus musculus
Title scRNA_5exp_Brain_fore_E13_5
BioProject PRJCA004455
BioSample SAMC338296
Platform Illumina NovaSeq 6000
Library
Library name Construction protocol Strategy Source Selection Layout
Single cell RNA-seq was performed using the Single Cell 5' RNA Reagent Kits (10x Genomics, Pleasanton, California) according to the manufacturer’s instruction.Cellular suspensions were loaded on the sample chip in the Chromium Controller instrument (10X Genomics) to generate single-cell Gel Bead-In-Emulsions (GEMs). After RT, GEMs were harvested and the cDNAs were amplified, and cleaned up with SPRIselect Reagent Kit. libraries were constructed using Chromium Single Cell 5' Library kit based for enzymatic fragmentation, end-repair, A-tailing, adaptor ligation, ligation cleanup, sample index PCR, and PCR cleanup. RNA-Seq TRANSCRIPTOMIC SINGLE CELL PCR PAIRED
Processing Planned read length (bp) for mate 1: 150
Planned read length (bp) for mate 2: 150
Release date2023-02-18
Run
Run accession Run data file information
File nameFile size (MB)
CRR266032 CRR266032_f1.fastq.gz
CRR266032_r2.fastq.gz
29,790.72
31,208.99
CRR266033 CRR266033_f1.fastq.gz
CRR266033_r2.fastq.gz
40,688.52
43,102.26
SubmitterJiangLab BIG (jianglab-gsa@big.ac.cn)
OrganizationBeijing Institute of Genomics, Chinese Academy of Sciences
Date submitted2021-02-10