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Experiment information
Accession CRX238196
Organism Baylisascaris schroederi
Title BSSc_L5_1
BioProject PRJCA004880
BioSample SAMC353906
Platform Illumina HiSeq 4000
Library
Library name Construction protocol Strategy Source Selection Layout
RNA samples from eggs, L2, L5, and female adult samples of B. schroederi were used for Illumina (San Diego, CA, USA) library construction and sequencing, respectively. The cDNA libraries for Illumina HiSeq 4000 sequencing were constructed as follows: mRNA was enriched from the total RNA using the magneticoligodTbead binding method and sheared into short fragments using fragmentation buffer. Then, the short mRNAs were used as templates to synthesize double-stranded cDNAs using random primers by reverse transcription. The cDNA fragments were purified using a QiaQuick PCR extraction kit (Qiagen, Venlo, Netherlands) and ligated with Illumina sequencing adapters. The ligation products were size selected by agarose gel electrophoresis and enriched by PCR to construct the cDNA libraries, which were sequenced on the Illumina HiSeq 4006 platform RNA-Seq TRANSCRIPTOMIC cDNA PAIRED
Processing Planned read length (bp) for mate 1: 150
Planned read length (bp) for mate 2: 150
Release date2021-09-10
Run
Run accession Run data file information
File nameFile size (MB)
CRR281532 CRR281532_f1.fastq.gz
CRR281532_r2.fastq.gz
1,094.01
1,367.13
SubmitterSen Wang (wangsenh86@caas.cn)
OrganizationAgricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences
Date submitted2021-05-06