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Mice stool samples were collected for bacterial 16S rRNA gene sequencing. For microbiome analysis, fecal pellets were immediately collected after anatomy and snap-frozen on dry ice, then stored at -80 °C until sequencing. Microbial community genomic DNA was extracted from stool samples using the E.Z.N.A.® soil DNA Kit (Omega Bio-tek, Norcross, GA, U.S.) according to manufacturer’s instructions. The DNA extract was checked on 1% agarose gel, and DNA concentration and purity were determined with NanoDrop 2000 UV-vis spectrophotometer (Thermo Scientific, Wilmington, USA). The hypervariable region V3-V4 of the bacterial 16S rRNA gene were amplified with primer pairs 338F (5'-ACTCCTACGGGAGGCAGCAG-3') and 806R (5'-GGACTACHVGGGTWTCTAAT-3') by an ABI GeneAmp® 9700 PCR thermocycler (ABI, CA, USA). |
AMPLICON |
OTHER |
PCR |
PAIRED
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