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Experiment information
Accession CRX463650
Organism Columba livia
Title Nur_1day_Hi-C_replicate_2
BioProject PRJCA010163
BioSample SAMC810521
Platform BGISEQ-500
Library
Library name Construction protocol Strategy Source Selection Layout
Crop tissue were pulverized, and 37% formaldehyde was added to obtain a final concentration of 4% for chromatin cross-linking. Mixture were incubated at room temperature (20-25°C) for 30 minutes, then glycine was added to obtain a final concentration of 0.25 mol/L to quench the formaldehyde. The mixture was then centrifuge at 1,500×g for 10 min at room temperature, and sediment was added the lysis buffer and homogenized. Homogenate was centrifuge at 5,000×g for adipocytes sediment. Nuclei of formaldehyde fixed adipose tissue were permeabilized and DNA was digested with 200 units of Dpn II (a 4-cutter restriction enzyme) for one hour at 37°C. The restriction fragment overhangs were filled and labbled by biotinylated nucleotides, then ligated in a small volume. After crosslink. reversal, ligated DNA was purified and sheared to a length of 300-500 bp, at which point ligation junctions were pulled down with streptavidin beads and prepped for BGISEQ-500 sequencing. Hi-C GENOMIC RANDOM PCR PAIRED
Processing Planned read length (bp) for mate 1: 100
Planned read length (bp) for mate 2: 100
Release date2023-02-10
Run
Run accession Run data file information
File nameFile size (MB)
CRR523727 CRR523727_f1.fq.gz
CRR523727_r2.fq.gz
101,055.22
103,556.24
SubmitterXun Wang (xunwang@sicau.edu.cn)
Organizationsichuan agricultrural university
Date submitted2022-06-26
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