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CRA009621 Information
Title: Transcriptomics of mouse liver organoid perturbed by OSCAR
BioProject: PRJCA014442 /
Release date: 2023-01-27
Files: 168
File size: 1154.00 GB
Publication
Journal name
Genome Biology
Year
2023
DOI
10.1186/s13059-023-03084-8
PubMed ID
37907970

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Experiments & Runs
Experiment accession Title Taxon name Platform Sample accession
CRX575979 Organoid_OSCAR_EM_3 Mus musculus Illumina NovaSeq 6000 SAMC1052345
Run accession Run alias Run data file information
CRR644444 OSCAR_mCROP_EM2_3-1 File: CRR644444_f1.fastq.gz
File: CRR644444_r2.fastq.gz
CRR644445 OSCAR_mCROP_EM2_3-2 File: CRR644445_f1.fastq.gz
File: CRR644445_r2.fastq.gz
CRR644446 OSCAR_mCROP_EM2_3-3 File: CRR644446_f1.fastq.gz
File: CRR644446_r2.fastq.gz
CRR644447 OSCAR_mCROP_EM2_3-4 File: CRR644447_f1.fastq.gz
File: CRR644447_r2.fastq.gz
CRR644448 OSCAR_mCROP_EM2_3-5 File: CRR644448_f1.fastq.gz
File: CRR644448_r2.fastq.gz
CRR644449 OSCAR_mCROP_EM2_3-6 File: CRR644449_f1.fastq.gz
File: CRR644449_r2.fastq.gz
CRR644450 OSCAR_mCROP_EM2_3-7 File: CRR644450_f1.fastq.gz
File: CRR644450_r2.fastq.gz
CRR644451 OSCAR_mCROP_EM2_3-8 File: CRR644451_f1.fastq.gz
File: CRR644451_r2.fastq.gz
CRX575978 Organoid_OSCAR_EM_2 Mus musculus Illumina NovaSeq 6000 SAMC1052344
Run accession Run alias Run data file information
CRR644436 OSCAR_mCROP_EM2_2-1 File: CRR644436_f1.fastq.gz
File: CRR644436_r2.fastq.gz
CRR644437 OSCAR_mCROP_EM2_2-2 File: CRR644437_f1.fastq.gz
File: CRR644437_r2.fastq.gz
CRR644438 OSCAR_mCROP_EM2_2-3 File: CRR644438_f1.fastq.gz
File: CRR644438_r2.fastq.gz
CRR644439 OSCAR_mCROP_EM2_2-4 File: CRR644439_f1.fastq.gz
File: CRR644439_r2.fastq.gz
CRR644440 OSCAR_mCROP_EM2_2-5 File: CRR644440_f1.fastq.gz
File: CRR644440_r2.fastq.gz
CRR644441 OSCAR_mCROP_EM2_2-6 File: CRR644441_f1.fastq.gz
File: CRR644441_r2.fastq.gz
CRR644442 OSCAR_mCROP_EM2_2-7 File: CRR644442_f1.fastq.gz
File: CRR644442_r2.fastq.gz
CRR644443 OSCAR_mCROP_EM2_2-8 File: CRR644443_f1.fastq.gz
File: CRR644443_r2.fastq.gz
CRX575977 Organoid_OSCAR_EM_1 Mus musculus Illumina NovaSeq 6000 SAMC1052343
Run accession Run alias Run data file information
CRR644424 OSCAR_mCROP_EM2_1-1 File: CRR644424_f1.fastq.gz
File: CRR644424_r2.fastq.gz
CRR644425 OSCAR_mCROP_EM2_1-2 File: CRR644425_f1.fastq.gz
File: CRR644425_r2.fastq.gz
CRR644426 OSCAR_mCROP_EM2_1-3 File: CRR644426_f1.fastq.gz
File: CRR644426_r2.fastq.gz
CRR644427 OSCAR_mCROP_EM2_1-4 File: CRR644427_f1.fastq.gz
File: CRR644427_r2.fastq.gz
CRR644428 OSCAR_mCROP_EM2_1-5 File: CRR644428_f1.fastq.gz
File: CRR644428_r2.fastq.gz
CRR644429 OSCAR_mCROP_EM2_1-6 File: CRR644429_f1.fastq.gz
File: CRR644429_r2.fastq.gz
CRR644430 OSCAR_mCROP_EM2_1-7 File: CRR644430_f1.fastq.gz
File: CRR644430_r2.fastq.gz
CRR644431 OSCAR_mCROP_EM2_1-8 File: CRR644431_f1.fastq.gz
File: CRR644431_r2.fastq.gz
CRR644432 OSCAR_mCROP_EM2_1-9 File: CRR644432_f1.fastq.gz
File: CRR644432_r2.fastq.gz
CRR644433 OSCAR_mCROP_EM2_1-10 File: CRR644433_f1.fastq.gz
File: CRR644433_r2.fastq.gz
CRR644434 OSCAR_mCROP_EM2_1-11 File: CRR644434_f1.fastq.gz
File: CRR644434_r2.fastq.gz
CRR644435 OSCAR_mCROP_EM2_1-12 File: CRR644435_f1.fastq.gz
File: CRR644435_r2.fastq.gz
CRX575976 Organoid_OSCAR_DM_6 Mus musculus Illumina NovaSeq 6000 SAMC1052342
Run accession Run alias Run data file information
CRR644416 OSCAR_mCROP_DM2_6-1 File: CRR644416_f1.fastq.gz
File: CRR644416_r2.fastq.gz
CRR644417 OSCAR_mCROP_DM2_6-2 File: CRR644417_f1.fastq.gz
File: CRR644417_r2.fastq.gz
CRR644418 OSCAR_mCROP_DM2_6-3 File: CRR644418_f1.fastq.gz
File: CRR644418_r2.fastq.gz
CRR644419 OSCAR_mCROP_DM2_6-4 File: CRR644419_f1.fastq.gz
File: CRR644419_r2.fastq.gz
CRR644420 OSCAR_mCROP_DM2_6-5 File: CRR644420_f1.fastq.gz
File: CRR644420_r2.fastq.gz
CRR644421 OSCAR_mCROP_DM2_6-6 File: CRR644421_f1.fastq.gz
File: CRR644421_r2.fastq.gz
CRR644422 OSCAR_mCROP_DM2_6-7 File: CRR644422_f1.fastq.gz
File: CRR644422_r2.fastq.gz
CRR644423 OSCAR_mCROP_DM2_6-8 File: CRR644423_f1.fastq.gz
File: CRR644423_r2.fastq.gz
CRX575975 Organoid_OSCAR_DM_5 Mus musculus Illumina NovaSeq 6000 SAMC1052341
Run accession Run alias Run data file information
CRR644408 OSCAR_mCROP_DM2_5-1 File: CRR644408_f1.fastq.gz
File: CRR644408_r2.fastq.gz
CRR644409 OSCAR_mCROP_DM2_5-2 File: CRR644409_f1.fastq.gz
File: CRR644409_r2.fastq.gz
CRR644410 OSCAR_mCROP_DM2_5-3 File: CRR644410_f1.fastq.gz
File: CRR644410_r2.fastq.gz
CRR644411 OSCAR_mCROP_DM2_5-4 File: CRR644411_f1.fastq.gz
File: CRR644411_r2.fastq.gz
CRR644412 OSCAR_mCROP_DM2_5-5 File: CRR644412_f1.fastq.gz
File: CRR644412_r2.fastq.gz
CRR644413 OSCAR_mCROP_DM2_5-6 File: CRR644413_f1.fastq.gz
File: CRR644413_r2.fastq.gz
CRR644414 OSCAR_mCROP_DM2_5-7 File: CRR644414_f1.fastq.gz
File: CRR644414_r2.fastq.gz
CRR644415 OSCAR_mCROP_DM2_5-8 File: CRR644415_f1.fastq.gz
File: CRR644415_r2.fastq.gz
CRX575974 Organoid_OSCAR_DM_4 Mus musculus Illumina NovaSeq 6000 SAMC1052340
Run accession Run alias Run data file information
CRR644400 OSCAR_mCROP_DM2_4-1 File: CRR644400_f1.fastq.gz
File: CRR644400_r2.fastq.gz
CRR644401 OSCAR_mCROP_DM2_4-2 File: CRR644401_f1.fastq.gz
File: CRR644401_r2.fastq.gz
CRR644402 OSCAR_mCROP_DM2_4-3 File: CRR644402_f1.fastq.gz
File: CRR644402_r2.fastq.gz
CRR644403 OSCAR_mCROP_DM2_4-4 File: CRR644403_f1.fastq.gz
File: CRR644403_r2.fastq.gz
CRR644404 OSCAR_mCROP_DM2_4-5 File: CRR644404_f1.fastq.gz
File: CRR644404_r2.fastq.gz
CRR644405 OSCAR_mCROP_DM2_4-6 File: CRR644405_f1.fastq.gz
File: CRR644405_r2.fastq.gz
CRR644406 OSCAR_mCROP_DM2_4-7 File: CRR644406_f1.fastq.gz
File: CRR644406_r2.fastq.gz
CRR644407 OSCAR_mCROP_DM2_4-8 File: CRR644407_f1.fastq.gz
File: CRR644407_r2.fastq.gz
CRX575973 Organoid_OSCAR_DM_3 Mus musculus Illumina NovaSeq 6000 SAMC1052339
Run accession Run alias Run data file information
CRR644392 OSCAR_mCROP_DM2_3-1 File: CRR644392_f1.fastq.gz
File: CRR644392_r2.fastq.gz
CRR644393 OSCAR_mCROP_DM2_3-2 File: CRR644393_f1.fastq.gz
File: CRR644393_r2.fastq.gz
CRR644394 OSCAR_mCROP_DM2_3-3 File: CRR644394_f1.fastq.gz
File: CRR644394_r2.fastq.gz
CRR644395 OSCAR_mCROP_DM2_3-4 File: CRR644395_f1.fastq.gz
File: CRR644395_r2.fastq.gz
CRR644396 OSCAR_mCROP_DM2_3-5 File: CRR644396_f1.fastq.gz
File: CRR644396_r2.fastq.gz
CRR644397 OSCAR_mCROP_DM2_3-6 File: CRR644397_f1.fastq.gz
File: CRR644397_r2.fastq.gz
CRR644398 OSCAR_mCROP_DM2_3-7 File: CRR644398_f1.fastq.gz
File: CRR644398_r2.fastq.gz
CRR644399 OSCAR_mCROP_DM2_3-8 File: CRR644399_f1.fastq.gz
File: CRR644399_r2.fastq.gz
CRX575972 Organoid_OSCAR_DM_2 Mus musculus Illumina NovaSeq 6000 SAMC1052338
Run accession Run alias Run data file information
CRR644384 OSCAR_mCROP_DM2_2-1 File: CRR644384_f1.fastq.gz
File: CRR644384_r2.fastq.gz
CRR644385 OSCAR_mCROP_DM2_2-2 File: CRR644385_f1.fastq.gz
File: CRR644385_r2.fastq.gz
CRR644386 OSCAR_mCROP_DM2_2-3 File: CRR644386_f1.fastq.gz
File: CRR644386_r2.fastq.gz
CRR644387 OSCAR_mCROP_DM2_2-4 File: CRR644387_f1.fastq.gz
File: CRR644387_r2.fastq.gz
CRR644388 OSCAR_mCROP_DM2_2-5 File: CRR644388_f1.fastq.gz
File: CRR644388_r2.fastq.gz
CRR644389 OSCAR_mCROP_DM2_2-6 File: CRR644389_f1.fastq.gz
File: CRR644389_r2.fastq.gz
CRR644390 OSCAR_mCROP_DM2_2-7 File: CRR644390_f1.fastq.gz
File: CRR644390_r2.fastq.gz
CRR644391 OSCAR_mCROP_DM2_2-8 File: CRR644391_f1.fastq.gz
File: CRR644391_r2.fastq.gz
CRX575971 Organoid_OSCAR_DM_1 Mus musculus Illumina NovaSeq 6000 SAMC1052337
Run accession Run alias Run data file information
CRR644376 OSCAR_mCROP_DM2_1-1 File: CRR644376_f1.fastq.gz
File: CRR644376_r2.fastq.gz
CRR644377 OSCAR_mCROP_DM2_1-2 File: CRR644377_f1.fastq.gz
File: CRR644377_r2.fastq.gz
CRR644378 OSCAR_mCROP_DM2_1-3 File: CRR644378_f1.fastq.gz
File: CRR644378_r2.fastq.gz
CRR644379 OSCAR_mCROP_DM2_1-4 File: CRR644379_f1.fastq.gz
File: CRR644379_r2.fastq.gz
CRR644380 OSCAR_mCROP_DM2_1-5 File: CRR644380_f1.fastq.gz
File: CRR644380_r2.fastq.gz
CRR644381 OSCAR_mCROP_DM2_1-6 File: CRR644381_f1.fastq.gz
File: CRR644381_r2.fastq.gz
CRR644382 OSCAR_mCROP_DM2_1-7 File: CRR644382_f1.fastq.gz
File: CRR644382_r2.fastq.gz
CRR644383 OSCAR_mCROP_DM2_1-8 File: CRR644383_f1.fastq.gz
File: CRR644383_r2.fastq.gz
CRX575970 Organoid_OSCAR_EM_pilot Mus musculus Illumina NovaSeq 6000 SAMC1052336
Run accession Run alias Run data file information
CRR644372 OSCAR_pilot_ME2-1 File: CRR644372_f1.fastq.gz
File: CRR644372_r2.fastq.gz
CRR644373 OSCAR_pilot_ME2-2 File: CRR644373_f1.fastq.gz
File: CRR644373_r2.fastq.gz
CRR644374 OSCAR_pilot_ME2-3 File: CRR644374_f1.fastq.gz
File: CRR644374_r2.fastq.gz
CRR644375 OSCAR_pilot_ME2-4 File: CRR644375_f1.fastq.gz
File: CRR644375_r2.fastq.gz
CRX575969 Organoid_OSCAR_DM_pilot Mus musculus Illumina NovaSeq 6000 SAMC1052335
Run accession Run alias Run data file information
CRR644368 OSCAR_pilot_MD2-1 File: CRR644368_f1.fastq.gz
File: CRR644368_r2.fastq.gz
CRR644369 OSCAR_pilot_MD2-2 File: CRR644369_f1.fastq.gz
File: CRR644369_r2.fastq.gz
CRR644370 OSCAR_pilot_MD2-3 File: CRR644370_f1.fastq.gz
File: CRR644370_r2.fastq.gz
CRR644371 OSCAR_pilot_MD2-4 File: CRR644371_f1.fastq.gz
File: CRR644371_r2.fastq.gz
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Submitter:Jun Cao (caojundudu@qq.com)
Organization:Institute of Basic Medical Sciences Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College
Date submitted:2023-01-20