| Accession | CRX575970 |
| Organism | Mus musculus |
| Title | Organoid_OSCAR_EM_pilot |
| BioProject | PRJCA014442 |
| BioSample | SAMC1052336 |
| Platform | Illumina NovaSeq 6000 |
| Library |
| Library name |
Construction protocol |
Strategy |
Source |
Selection |
Layout |
|
At the endpoint of differentiation, approximately 30,000 BECs from EM condition and 60,000 differentiated hepatocyte-like cells from DM condition were captured by the Chromium Controller using Chromium Next GEM Single Cell 3 kit v2 (10 Genomics) with 10,000 input cells for each lane. Libraries were built according to the manufacturer s instructions and sequenced on an Illumina NovaSeq 6000 platform. |
RNA-Seq |
TRANSCRIPTOMIC SINGLE CELL |
PolyA |
PAIRED
|
|
| Processing |
Planned read length (bp) for mate 1: 150
Planned read length (bp) for mate 2: 150
|
| Release date | 2023-01-27 |
|---|
| Run |
| Run accession |
Run data file information |
| File name | File size (MB) |
|---|
| CRR644372 |
CRR644372_f1.fastq.gz
CRR644372_r2.fastq.gz
|
11,182.55
11,715.41
|
| CRR644373 |
CRR644373_f1.fastq.gz
CRR644373_r2.fastq.gz
|
11,672.44
12,058.64
|
| CRR644374 |
CRR644374_f1.fastq.gz
CRR644374_r2.fastq.gz
|
5,191.27
5,506.29
|
| CRR644375 |
CRR644375_f1.fastq.gz
CRR644375_r2.fastq.gz
|
19,357.38
20,343.1
|
|
| Submitter | Jun Cao (caojundudu@qq.com) |
|---|
| Organization | Institute of Basic Medical Sciences Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College |
|---|
| Date submitted | 2023-01-20 |
|---|
