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Experiment information
Accession CRX575977
Organism Mus musculus
Title Organoid_OSCAR_EM_1
BioProject PRJCA014442
BioSample SAMC1052343
Platform Illumina NovaSeq 6000
Library
Library name Construction protocol Strategy Source Selection Layout
At the endpoint of differentiation, approximately 30,000 BECs from EM condition and 60,000 differentiated hepatocyte-like cells from DM condition were captured by the Chromium Controller using Chromium Next GEM Single Cell 3 kit v2 (10 Genomics) with 10,000 input cells for each lane. Libraries were built according to the manufacturer s instructions and sequenced on an Illumina NovaSeq 6000 platform. RNA-Seq TRANSCRIPTOMIC SINGLE CELL PolyA PAIRED
Processing Planned read length (bp) for mate 1: 150
Planned read length (bp) for mate 2: 150
Release date2023-01-27
Run
Run accession Run data file information
File nameFile size (MB)
CRR644424 CRR644424_f1.fastq.gz
CRR644424_r2.fastq.gz 		6,376.49
5,641.85
CRR644425 CRR644425_f1.fastq.gz
CRR644425_r2.fastq.gz 		6,264.92
5,598.89
CRR644426 CRR644426_f1.fastq.gz
CRR644426_r2.fastq.gz 		9,517.25
8,986.73
CRR644427 CRR644427_f1.fastq.gz
CRR644427_r2.fastq.gz 		3,974.52
3,515.16
CRR644428 CRR644428_f1.fastq.gz
CRR644428_r2.fastq.gz 		3,907.8
3,492.1
CRR644429 CRR644429_f1.fastq.gz
CRR644429_r2.fastq.gz 		5,906.7
5,572.41
CRR644430 CRR644430_f1.fastq.gz
CRR644430_r2.fastq.gz 		3,656.8
3,237.97
CRR644431 CRR644431_f1.fastq.gz
CRR644431_r2.fastq.gz 		3,601.41
3,222.71
CRR644432 CRR644432_f1.fastq.gz
CRR644432_r2.fastq.gz 		5,360.67
5,079.11
CRR644433 CRR644433_f1.fastq.gz
CRR644433_r2.fastq.gz 		4,364.82
3,868.11
CRR644434 CRR644434_f1.fastq.gz
CRR644434_r2.fastq.gz 		4,300.71
3,852.06
CRR644435 CRR644435_f1.fastq.gz
CRR644435_r2.fastq.gz 		6,432.11
6,085.72
SubmitterJun Cao (caojundudu@qq.com)
OrganizationInstitute of Basic Medical Sciences Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College
Date submitted2023-01-20
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