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Experiment information
Accession CRX1209775
Organism Bos taurus
Accession in Other Database Gene Expression Omnibus: GSM8216281
Title fetal_rumen_chip_H3K4me3_1
BioProject PRJCA030053
BioSample SAMC4170910
Platform Illumina NovaSeq 6000
Library
Library name Construction protocol Strategy Source Selection Layout
For tissues, we collected fetal tissues from four healthy pregnant Holstein cows at a slaughterhouse. After the slaughter, we extracted fetal tissues to examine their normal development and measured the crown-rump length (CRL) to estimate gestational age. The gender was identified based on the position of the gonads within the abdominal cavity, anatomical structures, and relationships with adjacent organs (mesonephros and/or kidneys). Two male and two female fetuses were identified (13-16 cm CRL), nine different tissues were collected, including the forebrain, hindbrain, heart, liver, lungs, skeletal muscle (hind limb), kidneys, rumen, and testes. Cells were collected by tryple-select enzyme and the lyophilized cells were sent for sequencing. Transcriptome (RNA) sequencing was performed by Tianjin Nuohe Zhiyuan Biotechnology Co., LTD, Tianjin, China. Sequencing libraries were generated using NEBNext UltraTM RNA Library Prep Kit for Illumina (NEB, USA) following manufacturer’s recommendations and index codes were added to attribute sequences to each samp ChIP-Seq GENOMIC PCR PAIRED
Processing Planned read length (bp) for mate 1: 150
Planned read length (bp) for mate 2: 150
Release date2024-10-04
Run
Run accession Run data file information
File nameFile size (MB)
CRR1322566 CRR1322566_r1.fq.gz
CRR1322566_r2.fq.gz
1,948.2
2,045.9
Submitterjing wang (nnlrl@mail.imu.edu.cn)
OrganizationInner Mongolia University
Date submitted2024-10-02