IC4R Information Commons for Rice

IC4R-OSJ01G000400

Gene Summary

Gene Accession IC4R-OSJ01G000400
Symbol
ID Mapping LOC_Os01g01040,Os01g0100500
Gene Description Transmembrane Protein
Organism Oryza sativa Japonica Group
Type Protein-coding Gene
Length (bp) 4031
Chromosome Chromosome 1
Location 16292:20323
Strand +
Additional Links MSU; RAP-DB;

Genome Browser

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Ontologies

Gene Ontology
GO:0003674 Molecular Function Molecular Function
GO:0008150 Biological Process Biological Process
GO:0016021 Cellular Component Integral Component Of Membrane
Plant Ontology
No related terms.
Environment Ontology
No related terms.
Trait Ontology
No related terms.

Functional Annotation

Functional Categories
ID
Description
ProSiteProfilesPS51257Prokaryotic membrane lipoprotein lipid attachment site profile.
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Transcripts

mRNA ID
mRNA Length
GC Content
purine Content
CDS Length
CDS Sequence
Protein ID
Protein Length
Protein Sequence
IC4R-OSJ01T000400.1152451.3146.191185IC4R-OSJ01P000400.1395
IC4R-OSJ01T000400.2248248.0348.911575IC4R-OSJ01P000400.2525
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RNA-Seq Evidence

Created with Highcharts 6.0.2Tissue typesNumber of RNA-Seq librariesSupported by 582 RNA-Seq libraries, involved with 17 tissue types3263268888484827271717171713131212777766553333111111LeafRootSeedlingShootSeedCallusFlowersMeristemSpikeletEndospermAleuroneCrownColeoptilePanicleStemSheathNode050100150200250300350
Run ID
Layout
Bases (MB)
Spots (Millions)
Tissues
Description
Release Date
DRR000349SINGLE1252.8934.8ShootShoot & under normal condition1/12/2010
DRR000354SINGLE936.9326.03RootShoot & 1hour after salinity stress condition1/12/2010
DRR000627PAIRED2261.1811.31FlowersRice Transcriptome Multiplex-2_ovary28/3/2016
DRR000628PAIRED2272.1311.36FlowersRice Transcriptome Multiplex-2_ovary28/3/2016
DRR000629PAIRED3520.3817.6FlowersRice Transcriptome Multiplex-2_ovary28/3/2016
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Expression Profiles

Average (TPM) Median (TPM) Maximum (TPM) Minimum (TPM) CV τ-Value Tissues Breadth
19.861306 22.685047 31.641987 0.0 0.439777 0.394212373 17
TPM: Transcripts Per Million; CV: Coefficient of Variance; τ-Value: Tissue Specificity Index

Community Curation & Comments