IC4R Information Commons for Rice

IC4R-OSJ01G086600

Gene Summary

Gene Accession IC4R-OSJ01G086600
Symbol Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a
ID Mapping LOC_Os01g10110,Os01g0197700
Gene Description Cytokinin Dehydrogenase Precursor
Organism Oryza sativa Japonica Group
Type Protein-coding Gene
Length (bp) 5575
Chromosome Chromosome 1
Location 5270103:5275678
Strand -
Additional Links MSU; RAP-DB;

Genome Browser

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Ontologies

Gene Ontology
GO:0009987 Biological Process cellular process
GO:0010229 Biological Process Inflorescence Development
GO:0009736 Biological Process Cytokinin-Activated Signaling Pathway
GO:0005615 Cellular Component Extracellular Space
GO:0016491 Molecular Function Oxidoreductase Activity
GO:0055114 Biological Process Oxidation-Reduction Process
GO:0009690 Biological Process Cytokinin Metabolic Process
GO:0016614 Molecular Function Oxidoreductase Activity, Acting On Ch-Oh Group Of Donors
GO:0050660 Molecular Function Flavin Adenine Dinucleotide Binding
GO:0019139 Molecular Function cytokinin dehydrogenase activity
GO:0005773 Cellular Component vacuole
GO:0008152 Biological Process metabolic process
GO:0009056 Biological Process catabolic process
GO:0003824 Molecular Function catalytic activity
Plant Ontology
PO:0025034 Plant Anatomy leaf
PO:1000411 Others inflorescenece primary branch primordium
PO:1000509 Others secondary inflorescence branch meristem
PO:0020148 Plant Anatomy shoot apical meristem
PO:0009005 Plant Anatomy root
PO:0000230 Plant Anatomy inflorescence meristem
PO:1000518 Others seedling development stage
PO:0001083 Plant Structure Development Stage inflorescence development stage
Environment Ontology
No related terms.
Trait Ontology
No related terms.

Functional Annotation

Transcripts

RNA-Seq Evidence

Expression Profiles

Average (TPM) Median (TPM) Maximum (TPM) Minimum (TPM) CV τ-Value Tissues Breadth
9.135101 2.406901 94.23405 0.0 2.318444 0.95618059 16
TPM: Transcripts Per Million; CV: Coefficient of Variance; τ-Value: Tissue Specificity Index

Community Curation & Comments