IC4R Information Commons for Rice

IC4R-OSJ02G018300

Gene Summary

Gene Accession IC4R-OSJ02G018300
Symbol tdr, OsbHLH005, OsbHLH5, bhlh5, TDR1
ID Mapping LOC_Os02g02820,Os02g0120500
Gene Description Helix-Loop-Helix Dna-Binding Domain Containing Protein
Organism Oryza sativa Japonica Group
Type Protein-coding Gene
Length (bp) 3420
Chromosome Chromosome 2
Location 1073486:1076906
Strand -
Additional Links MSU; RAP-DB;

Genome Browser

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Ontologies

Gene Ontology
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function transcription factor activity
GO:0007275 Biological Process multicellular organismal development
GO:0009908 Biological Process flower development
GO:0009058 Biological Process biosynthetic process
GO:0006139 Biological Process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
GO:0005634 Cellular Component nucleus
GO:0048654 Biological Process anther morphogenesis
GO:0048657 Biological Process tapetal cell differentiation
GO:0010234 Biological Process tapetal cell fate specification
GO:0046983 Molecular Function Protein Dimerization Activity
GO:0000978 Molecular Function Rna Polymerase Ii Proximal Promoter Sequence-Specific Dna Binding
GO:0003682 Molecular Function Chromatin Binding
GO:0006351 Biological Process Transcription, Dna-Templated
GO:0006355 Biological Process Regulation Of Transcription, Dna-Templated
GO:0009555 Biological Process Pollen Development
Plant Ontology
No related terms.
Environment Ontology
No related terms.
Trait Ontology
No related terms.

Functional Annotation

Transcripts

RNA-Seq Evidence

Expression Profiles

Average (TPM) Median (TPM) Maximum (TPM) Minimum (TPM) CV τ-Value Tissues Breadth
6.002386 0.0 68.325439 0.0 2.714751 0.965805939 8
TPM: Transcripts Per Million; CV: Coefficient of Variance; τ-Value: Tissue Specificity Index

Community Curation & Comments