IC4R Information Commons for Rice

IC4R-OSJ02G019000

Gene Summary

Gene Accession IC4R-OSJ02G019000
Symbol CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti
ID Mapping LOC_Os02g02890,Os02g0121300
Gene Description Peptidyl-Prolyl Cis-Trans Isomerase
Organism Oryza sativa Japonica Group
Type Protein-coding Gene
Length (bp) 1077
Chromosome Chromosome 2
Location 1116059:1117136
Strand +
Additional Links MSU; RAP-DB;

Genome Browser

[View in new window]

Ontologies

Gene Ontology
GO:0004600 Molecular Function cyclophilin
GO:0003755 Molecular Function peptidyl
GO:0006457 Biological Process protein folding
GO:0042743 Biological Process hydrogen peroxide metabolic process
GO:0016018 Molecular Function cyclosporin A binding
GO:0015994 Biological Process chlorophyll metabolic process
GO:0000413 Biological Process protein peptidyl
GO:0005829 Cellular Component cytosol
GO:0003824 Molecular Function catalytic activity
GO:0009408 Biological Process response to heat
GO:0009414 Biological Process response to water deprivation
GO:0009651 Biological Process response to salt stress
GO:0009737 Biological Process response to abscisic acid stimulus
GO:0019538 Biological Process protein metabolic process
GO:0009987 Biological Process cellular process
GO:0006464 Biological Process protein modification process
GO:0005829 Cellular Component cytosol
GO:0005886 Cellular Component plasma membrane
Plant Ontology
PO:0009005 Plant Anatomy root
PO:0009006 Plant Anatomy shoot system
PO:0008037 Plant Anatomy seedling
PO:1000518 Others seedling development stage
Environment Ontology
EO:1000128 Others cyclosporin A
EO:1000069 Others dessication/dehydration stress
EO:1000016 Others polyethylene glycol (PEG) treatment
EO:0007332 Others cold air temperature regimen
EO:0007173 Others warm/hot temperature regimen
EO:0007048 Others sodium chloride regimen
EO:0007105 Others abscisic acid regimen
Trait Ontology
TO:0000605 Others hydrogen peroxide content
TO:0006060 Others leaf chlorosis
TO:1000015 Others photochemical efficiency
TO:1000034 Others superoxide dismutase (SOD) activity
TO:1000037 Others malondialdehyde (MDA) content
TO:1000038 Others catalase (CAT) activity
TO:1000044 Others ascorbate peroxidase activity (APX)
TO:1000088 Others peptidyl prolyl cis-trans isomerase (PPIase) activity

Functional Annotation

Transcripts

RNA-Seq Evidence

Expression Profiles

Average (TPM) Median (TPM) Maximum (TPM) Minimum (TPM) CV τ-Value Tissues Breadth
1796.009245 1121.647537 5735.486816 61.347682 0.851773 0.727263732 18
TPM: Transcripts Per Million; CV: Coefficient of Variance; τ-Value: Tissue Specificity Index

Community Curation & Comments