IC4R Information Commons for Rice

IC4R-OSJ03G016800

Gene Summary

Gene Accession IC4R-OSJ03G016800
Symbol cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1
ID Mapping LOC_Os03g02680,Os03g0118400
Gene Description Cyclin-Dependent Kinase A-1
Organism Oryza sativa Japonica Group
Type Protein-coding Gene
Length (bp) 3643
Chromosome Chromosome 3
Location 997600:1001243
Strand +
Additional Links MSU; RAP-DB;

Genome Browser

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Ontologies

Gene Ontology
GO:0009790 Biological Process embryonic development
GO:0051726 Biological Process Regulation Of Cell Cycle
GO:0051301 Biological Process Cell Division
GO:0004672 Molecular Function Protein Kinase Activity
GO:0005524 Molecular Function Atp Binding
GO:0006468 Biological Process Protein Phosphorylation
GO:0004693 Molecular Function cyclin
GO:0008353 Molecular Function RNA polymerase II carboxy
GO:0005634 Cellular Component nucleus
GO:0005886 Cellular Component plasma membrane
GO:0005829 Cellular Component cytosol
GO:0005737 Cellular Component cytoplasm
GO:0005856 Cellular Component cytoskeleton
GO:0016301 Molecular Function kinase activity
GO:0009791 Biological Process post
GO:0000003 Biological Process reproduction
GO:0006464 Biological Process protein modification process
GO:0009628 Biological Process response to abiotic stimulus
GO:0006950 Biological Process response to stress
GO:0007049 Biological Process cell cycle
GO:0009058 Biological Process biosynthetic process
GO:0006259 Biological Process DNA metabolic process
GO:0007275 Biological Process multicellular organismal development
GO:0009987 Biological Process cellular process
GO:0008152 Biological Process metabolic process
GO:0005515 Molecular Function protein binding
Plant Ontology
No related terms.
Environment Ontology
No related terms.
Trait Ontology
No related terms.

Functional Annotation

Transcripts

RNA-Seq Evidence

Expression Profiles

Average (TPM) Median (TPM) Maximum (TPM) Minimum (TPM) CV τ-Value Tissues Breadth
44.890154 47.499006 91.006405 0.0 0.512597 0.536544344 17
TPM: Transcripts Per Million; CV: Coefficient of Variance; τ-Value: Tissue Specificity Index

Community Curation & Comments