IC4R Information Commons for Rice

IC4R-OSJ03G097800

Gene Summary

Gene Accession IC4R-OSJ03G097800
Symbol OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1
ID Mapping LOC_Os03g11614,Os03g0215400
Gene Description Osmads1 - Mads-Box Family Gene With Mikcc Type-Box
Organism Oryza sativa Japonica Group
Type Protein-coding Gene
Length (bp) 8634
Chromosome Chromosome 3
Location 6052750:6061384
Strand -
Additional Links MSU; RAP-DB;

Genome Browser

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Ontologies

Gene Ontology
GO:0005515 Molecular Function protein binding
GO:0048509 Biological Process Regulation Of Meristem Development
GO:0045944 Biological Process Positive Regulation Of Transcription By Rna Polymerase Ii
GO:0030154 Biological Process Cell Differentiation
GO:0010582 Biological Process Floral Meristem Determinacy
GO:0006351 Biological Process Transcription, Dna-Templated
GO:0008134 Molecular Function Transcription Factor Binding
GO:0000977 Molecular Function Rna Polymerase Ii Regulatory Region Sequence-Specific Dna Binding
GO:0046983 Molecular Function Protein Dimerization Activity
GO:0006355 Biological Process Regulation Of Transcription, Dna-Templated
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function transcription factor activity
GO:0009908 Biological Process flower development
GO:0009058 Biological Process biosynthetic process
GO:0006139 Biological Process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
GO:0005634 Cellular Component nucleus
GO:0010076 Biological Process maintenance of floral meristem identity
GO:0010093 Biological Process specification of floral organ identity
GO:0042127 Biological Process regulation of cell proliferation
GO:0045595 Biological Process regulation of cell differentiation
Plant Ontology
PO:0001047 Plant Structure Development Stage lemma development stage
PO:0001048 Plant Structure Development Stage palea development stage
PO:0001049 Plant Structure Development Stage lodicule development stage
Environment Ontology
No related terms.
Trait Ontology
TO:0000245 Others pollen free
TO:0000377 Others cooked grain elongation
TO:0000373 Others inflorescence anatomy and morphology trait
TO:0000650 Others lemma length
TO:0000670 Others floret number
TO:0001000 Others glume cover
TO:0000614 Others lemma shape

Functional Annotation

Transcripts

RNA-Seq Evidence

Expression Profiles

Average (TPM) Median (TPM) Maximum (TPM) Minimum (TPM) CV τ-Value Tissues Breadth
93.909733 1.773851 504.337235 0.0 1.795578 0.861666095 11
TPM: Transcripts Per Million; CV: Coefficient of Variance; τ-Value: Tissue Specificity Index

Community Curation & Comments