IC4R Information Commons for Rice

IC4R-OSJ04G374100

Gene Summary

Gene Accession IC4R-OSJ04G374100
Symbol OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1, 1", OsAMT1.1, FCO12
ID Mapping LOC_Os04g43070,Os04g0509600
Gene Description Ammonium Transporter Protein
Organism Oryza sativa Japonica Group
Type Protein-coding Gene
Length (bp) 2475
Chromosome Chromosome 4
Location 25500158:25502633
Strand +
Additional Links MSU; RAP-DB;

Genome Browser

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Ontologies

Gene Ontology
GO:0015696 Biological Process ammonium transport
GO:0015843 Biological Process Methylammonium Transport
GO:0009624 Biological Process Response To Nematode
GO:0005887 Cellular Component Integral Component Of Plasma Membrane
GO:0008519 Molecular Function Ammonium Transmembrane Transporter Activity
GO:0072488 Biological Process Ammonium Transmembrane Transport
GO:0005886 Cellular Component plasma membrane
GO:0005575 Cellular Component Cellular Component
GO:0005634 Cellular Component nucleus
GO:0016020 Cellular Component membrane
GO:0009628 Biological Process response to abiotic stimulus
GO:0005215 Molecular Function transporter activity
GO:0060359 Biological Process response to ammonium ion
GO:0006810 Biological Process transport
GO:0009653 Biological Process anatomical structure morphogenesis
GO:0009791 Biological Process post
GO:0005886 Cellular Component plasma membrane
GO:0009987 Biological Process cellular process
GO:0016043 Biological Process cellular component organization
GO:0009719 Biological Process response to endogenous stimulus
Plant Ontology
PO:1000521 Others mature plant stage
PO:0001053 Plant Structure Development Stage 3 leaf fully expanded
PO:1000538 Others root segment, 50mm from root tip
PO:1000257 Others xylem sap
PO:0025034 Plant Anatomy leaf
PO:0009005 Plant Anatomy root
PO:1000518 Others seedling development stage
PO:0000003 Plant Anatomy whole plant
PO:0000042 Plant Anatomy shoot
PO:0000252 Plant Anatomy endodermis
PO:0006339 Plant Anatomy juvenile vascular leaf
PO:0009006 Plant Anatomy shoot system
PO:0009001 Plant Anatomy fruit
PO:0008037 Plant Anatomy seedling
Environment Ontology
EO:0007097 Others ammonium sulfate regimen
Trait Ontology
TO:1000527 Others glutamine content
TO:0000019 Others seedling height
TO:0000078 Others root dry weight
TO:1000554 Others ammonium ion (NH4+) influx
TO:1000553 Others root pressure
TO:1000552 Others solute permeability
TO:1000541 Others filled grain number per plant
TO:1000531 Others ammonium ion (NH4+) concentration
TO:0000152 Others panicle number
TO:1000389 Others presence of discontinuous suberin lamellae
TO:1000121 Others root growth
TO:0000702 Others starch concentration
TO:0000552 Others shoot dry weight
TO:0000496 Others carotenoid content
TO:0000495 Others chlorophyll content
TO:0000396 Others grain yield
TO:0000328 Others sucrose content
TO:0000227 Others root length

Functional Annotation

Transcripts

RNA-Seq Evidence

Expression Profiles

Average (TPM) Median (TPM) Maximum (TPM) Minimum (TPM) CV τ-Value Tissues Breadth
21.246273 18.377203 77.671844 0.0 0.836735 0.769194075 17
TPM: Transcripts Per Million; CV: Coefficient of Variance; τ-Value: Tissue Specificity Index

Community Curation & Comments