IC4R Information Commons for Rice

IC4R-OSJ04G435600

Gene Summary

Gene Accession IC4R-OSJ04G435600
Symbol OsCDPK13, OsCPK13, OsCDPK7, OsCPK13-1, OsCPK13-2
ID Mapping LOC_Os04g49510,Os04g0584600
Gene Description Camk_Camk_Like.27 - Camk Includes Calcium/Calmodulin Depedent Protein Kinases
Organism Oryza sativa Japonica Group
Type Protein-coding Gene
Length (bp) 5269
Chromosome Chromosome 4
Location 29531223:29536492
Strand +
Additional Links MSU; RAP-DB;

Genome Browser

[View in new window]

Ontologies

Gene Ontology
GO:0000166 Molecular Function nucleotide binding
GO:0016301 Molecular Function kinase activity
GO:0005488 Molecular Function binding
GO:0005515 Molecular Function protein binding
GO:0009409 Biological Process response to cold
GO:0009414 Biological Process response to water deprivation
GO:0009628 Biological Process response to abiotic stimulus
GO:0009651 Biological Process response to salt stress
GO:0009725 Biological Process response to hormone stimulus
GO:0009733 Biological Process response to auxin stimulus
GO:0009735 Biological Process response to cytokinin stimulus
GO:0009737 Biological Process response to abscisic acid stimulus
GO:0009739 Biological Process response to gibberellin stimulus
GO:0042538 Biological Process hyperosmotic salinity response
GO:0009058 Biological Process biosynthetic process
GO:0006464 Biological Process protein modification process
GO:0009719 Biological Process response to endogenous stimulus
GO:0007165 Biological Process signal transduction
GO:0006810 Biological Process transport
GO:0009987 Biological Process cellular process
GO:0016020 Cellular Component membrane
GO:0005829 Cellular Component cytosol
GO:0005886 Cellular Component plasma membrane
GO:0000166 Molecular Function nucleotide binding
GO:0016301 Molecular Function kinase activity
GO:0005488 Molecular Function binding
GO:0005515 Molecular Function protein binding
GO:0009409 Biological Process response to cold
GO:0009414 Biological Process response to water deprivation
GO:0009628 Biological Process response to abiotic stimulus
GO:0009651 Biological Process response to salt stress
GO:0009725 Biological Process response to hormone stimulus
GO:0009733 Biological Process response to auxin stimulus
GO:0009735 Biological Process response to cytokinin stimulus
GO:0009737 Biological Process response to abscisic acid stimulus
GO:0009739 Biological Process response to gibberellin stimulus
GO:0042538 Biological Process hyperosmotic salinity response
GO:0009058 Biological Process biosynthetic process
GO:0006464 Biological Process protein modification process
GO:0009719 Biological Process response to endogenous stimulus
GO:0007165 Biological Process signal transduction
GO:0006810 Biological Process transport
GO:0009987 Biological Process cellular process
GO:0016020 Cellular Component membrane
GO:0005829 Cellular Component cytosol
GO:0005886 Cellular Component plasma membrane
GO:0006468 Biological Process Protein Phosphorylation
GO:0005524 Molecular Function Atp Binding
GO:0004672 Molecular Function Protein Kinase Activity
GO:0005509 Molecular Function Calcium Ion Binding
GO:0005634 Cellular Component Nucleus
GO:0005737 Cellular Component Cytoplasm
GO:0004683 Molecular Function Calmodulin-Dependent Protein Kinase Activity
GO:0005516 Molecular Function Calmodulin Binding
GO:0009931 Molecular Function Calcium-Dependent Protein Serine/Threonine Kinase Activity
GO:0009738 Biological Process Abscisic Acid-Activated Signaling Pathway
GO:0018105 Biological Process Peptidyl-Serine Phosphorylation
GO:0035556 Biological Process Intracellular Signal Transduction
GO:0046777 Biological Process Protein Autophosphorylation
GO:1901002 Biological Process Positive Regulation Of Response To Salt Stress
Plant Ontology
PO:0007041 Plant Structure Development Stage inflorescence emergence stage
PO:0007106 Plant Structure Development Stage LP.03 three leaves visible
PO:1000166 Others 5-10 days post-anthesis stage
PO:1000518 Others seedling development stage
PO:1000521 Others mature plant stage
PO:0000003 Plant Anatomy whole plant
PO:0000016 Plant Anatomy lateral root primordium
PO:0000025 Plant Anatomy root tip
PO:0000252 Plant Anatomy endodermis
PO:0004724 Plant Anatomy hypocotyl-root junction
PO:0005020 Plant Anatomy vascular bundle
PO:0005352 Plant Anatomy xylem
PO:0005417 Plant Anatomy phloem
PO:0005421 Plant Anatomy parenchyma
PO:0005427 Plant Anatomy sclerenchyma
PO:0005679 Plant Anatomy epidermis
PO:0005772 Plant Anatomy exodermis
PO:0006085 Plant Anatomy root meristem
PO:0008035 Plant Anatomy plerome
PO:0008037 Plant Anatomy seedling
PO:0009005 Plant Anatomy root
PO:0009006 Plant Anatomy shoot system
PO:0009010 Plant Anatomy seed
PO:0009025 Plant Anatomy vascular leaf
PO:0009047 Plant Anatomy stem
PO:0009049 Plant Anatomy inflorescence
PO:0009051 Plant Anatomy spikelet
PO:0020039 Plant Anatomy leaf lamina
PO:0020124 Plant Anatomy root stele
PO:0025034 Plant Anatomy leaf
PO:0025181 Plant Anatomy root elongation zone
PO:1000085 Others lower shoot
PO:1000279 Others youngest leaf
PO:1000418 Others root peripheral vascular bundles
PO:1000422 Others cortical parenchyma cell
PO:0007041 Plant Structure Development Stage inflorescence emergence stage
PO:0007106 Plant Structure Development Stage LP.03 three leaves visible
PO:1000166 Others 5-10 days post-anthesis stage
PO:1000518 Others seedling development stage
PO:1000521 Others mature plant stage
PO:0000003 Plant Anatomy whole plant
PO:0000016 Plant Anatomy lateral root primordium
PO:0000025 Plant Anatomy root tip
PO:0000252 Plant Anatomy endodermis
PO:0004724 Plant Anatomy hypocotyl-root junction
PO:0005020 Plant Anatomy vascular bundle
PO:0005352 Plant Anatomy xylem
PO:0005417 Plant Anatomy phloem
PO:0005421 Plant Anatomy parenchyma
PO:0005427 Plant Anatomy sclerenchyma
PO:0005679 Plant Anatomy epidermis
PO:0005772 Plant Anatomy exodermis
PO:0006085 Plant Anatomy root meristem
PO:0008035 Plant Anatomy plerome
PO:0008037 Plant Anatomy seedling
PO:0009005 Plant Anatomy root
PO:0009006 Plant Anatomy shoot system
PO:0009010 Plant Anatomy seed
PO:0009025 Plant Anatomy vascular leaf
PO:0009047 Plant Anatomy stem
PO:0009049 Plant Anatomy inflorescence
PO:0009051 Plant Anatomy spikelet
PO:0020039 Plant Anatomy leaf lamina
PO:0020124 Plant Anatomy root stele
PO:0025034 Plant Anatomy leaf
PO:0025181 Plant Anatomy root elongation zone
PO:1000085 Others lower shoot
PO:1000279 Others youngest leaf
PO:1000418 Others root peripheral vascular bundles
PO:1000422 Others cortical parenchyma cell
Environment Ontology
EO:0007048 Others sodium chloride regimen
EO:0007105 Others abscisic acid regimen
EO:0007162 Others continuous light regimen
EO:0007198 Others water environment
EO:0007290 Others kinetin regimen
EO:0007332 Others cold air temperature regimen
EO:0007404 Others drought environment
EO:1000075 Others recovery treatment
EO:1000285 Others recovery treatment from salt stress
EO:1000286 Others recovery treatment from drought stress
EO:1000287 Others recovery treatment from cold stress
EO:0007048 Others sodium chloride regimen
EO:0007105 Others abscisic acid regimen
EO:0007162 Others continuous light regimen
EO:0007198 Others water environment
EO:0007290 Others kinetin regimen
EO:0007332 Others cold air temperature regimen
EO:0007404 Others drought environment
EO:1000075 Others recovery treatment
EO:1000285 Others recovery treatment from salt stress
EO:1000286 Others recovery treatment from drought stress
EO:1000287 Others recovery treatment from cold stress
Trait Ontology
TO:0000085 Others leaf rolling
TO:0000303 Others cold tolerance
TO:0000515 Others relative growth rate
TO:1000012 Others survival rate
TO:1000015 Others photochemical efficiency
TO:1000058 Others wilting ratio
TO:0000085 Others leaf rolling
TO:0000303 Others cold tolerance
TO:0000515 Others relative growth rate
TO:1000012 Others survival rate
TO:1000015 Others photochemical efficiency
TO:1000058 Others wilting ratio

Functional Annotation

Transcripts

RNA-Seq Evidence

Expression Profiles

Average (TPM) Median (TPM) Maximum (TPM) Minimum (TPM) CV τ-Value Tissues Breadth
55.026343 56.163277 102.236361 0.0 0.495743 0.488936396 17
TPM: Transcripts Per Million; CV: Coefficient of Variance; τ-Value: Tissue Specificity Index

Community Curation & Comments