IC4R Information Commons for Rice

IC4R-OSJ09G294500

Gene Summary

Gene Accession IC4R-OSJ09G294500
Symbol OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL
ID Mapping LOC_Os09g35030,Os09g0522200
Gene Description Dehydration-Responsive Element-Binding Protein
Organism Oryza sativa Japonica Group
Type Protein-coding Gene
Length (bp) 1183
Chromosome Chromosome 9
Location 20403149:20404332
Strand -
Additional Links MSU; RAP-DB;

Genome Browser

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Ontologies

Gene Ontology
GO:0005634 Cellular Component nucleus
GO:0006351 Biological Process Transcription, Dna-Templated
GO:0006355 Biological Process Regulation Of Transcription, Dna-Templated
GO:0003677 Molecular Function DNA binding
GO:0009409 Biological Process response to cold
GO:0016563 Molecular Function transcription activator activity
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function transcription factor activity
GO:0009628 Biological Process response to abiotic stimulus
GO:0009414 Biological Process response to water deprivation
GO:0009611 Biological Process response to wounding
GO:0009628 Biological Process response to abiotic stimulus
GO:0009632 Biological Process freezing tolerance
GO:0009651 Biological Process response to salt stress
GO:0006950 Biological Process response to stress
GO:0006139 Biological Process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
GO:0009058 Biological Process biosynthetic process
GO:0048589 Biological Process developmental growth
GO:0042538 Biological Process hyperosmotic salinity response
GO:0009753 Biological Process response to jasmonic acid stimulus
GO:0009633 Biological Process drought tolerance
Plant Ontology
PO:0007115 Plant Structure Development Stage LP.04 four leaves visible
PO:1000518 Others seedling development stage
PO:0000003 Plant Anatomy whole plant
PO:0008037 Plant Anatomy seedling
PO:0009006 Plant Anatomy shoot system
PO:0025034 Plant Anatomy leaf
Environment Ontology
EO:0007048 Others sodium chloride regimen
EO:1000287 Others recovery treatment from cold stress
EO:1000285 Others recovery treatment from salt stress
EO:1000097 Others propionic acid
EO:1000075 Others recovery treatment
EO:1000069 Others dessication/dehydration stress
EO:1000016 Others polyethylene glycol (PEG) treatment
EO:0007407 Others methyl jasmonate
EO:0007404 Others drought environment
EO:0007373 Others mechanical damage
EO:0007332 Others cold air temperature regimen
EO:0007198 Others water environment
EO:0007105 Others abscisic acid regimen
Trait Ontology
TO:0000276 Others drought tolerance
TO:0006002 Others proline content
TO:1000012 Others survival rate
TO:1000041 Others bolting time

Functional Annotation

Transcripts

RNA-Seq Evidence

Expression Profiles

Average (TPM) Median (TPM) Maximum (TPM) Minimum (TPM) CV τ-Value Tissues Breadth
13.22551 7.734231 60.707008 2.257499 1.070038 0.828150303 18
TPM: Transcripts Per Million; CV: Coefficient of Variance; τ-Value: Tissue Specificity Index

Community Curation & Comments