IC4R Information Commons for Rice

IC4R-OSJ12G038300

Gene Summary

Gene Accession IC4R-OSJ12G038300
Symbol OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51
ID Mapping LOC_Os12g04980,Os12g0143800
Gene Description Dna Repair Protein Rad51
Organism Oryza sativa Japonica Group
Type Protein-coding Gene
Length (bp) 4471
Chromosome Chromosome 12
Location 2153967:2158438
Strand -
Additional Links MSU; RAP-DB;

Genome Browser

[View in new window]

Ontologies

Gene Ontology
GO:0003690 Molecular Function Double-Stranded Dna Binding
GO:0006281 Biological Process Dna Repair
GO:0005634 Cellular Component Nucleus
GO:0007131 Biological Process Reciprocal Meiotic Recombination
GO:0005524 Molecular Function Atp Binding
GO:0000794 Cellular Component Condensed Nuclear Chromosome
GO:0005654 Cellular Component Nucleoplasm
GO:0000150 Molecular Function Recombinase Activity
GO:0000400 Molecular Function Four-Way Junction Dna Binding
GO:0008094 Molecular Function Dna-Dependent Atpase Activity
GO:0003697 Molecular Function Single-Stranded Dna Binding
GO:0004520 Molecular Function Endodeoxyribonuclease Activity
GO:0000730 Biological Process Dna Recombinase Assembly
GO:0006312 Biological Process Mitotic Recombination
GO:0010212 Biological Process Response To Ionizing Radiation
GO:0042148 Biological Process Strand Invasion
GO:0070192 Biological Process Chromosome Organization Involved In Meiotic Cell Cycle
GO:0006139 Biological Process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
GO:0000166 Molecular Function nucleotide binding
GO:0005515 Molecular Function protein binding
GO:0016787 Molecular Function hydrolase activity
GO:0008152 Biological Process metabolic process
GO:0006950 Biological Process response to stress
GO:0006259 Biological Process DNA metabolic process
GO:0007049 Biological Process cell cycle
GO:0009056 Biological Process catabolic process
GO:0003677 Molecular Function DNA binding
GO:0016043 Biological Process cellular component organization
GO:0051321 Biological Process meiotic cell cycle
GO:0000733 Biological Process DNA strand renaturation
GO:0000707 Biological Process meiotic DNA recombinase assembly
GO:0000724 Biological Process double
Plant Ontology
PO:0009004 Plant Anatomy gametophyte
Environment Ontology
No related terms.
Trait Ontology
TO:0000389 Others nuclear mediated male sterility

Functional Annotation

Transcripts

RNA-Seq Evidence

Expression Profiles

Average (TPM) Median (TPM) Maximum (TPM) Minimum (TPM) CV τ-Value Tissues Breadth
2.226269 1.638205 6.358442 0.0 0.872947 0.688099704 14
TPM: Transcripts Per Million; CV: Coefficient of Variance; τ-Value: Tissue Specificity Index

Community Curation & Comments