| LncRNA Accession | IC4R-OSJ01Lnc000100.3 |
|---|---|
| Chromosome | Chromosome 1 |
| Location | 17831:22969 |
| Strand | - |
| Length | 267 |
| Organism | Oryza sativa Japonica Group |
| Type | Long non-coding RNA |
| GC Content (%) | 59.93 |
| Purine Content (%) | 58.05 |
| Exon Number | 3 |
| Coding Potential Score (CPC) | -1.16 |
| Coding Potential Score (LGC) | 0 |
| Sequence | [Download] [View] |
| Average (TPM) | Median (TPM) | Maximum (TPM) | Minimum (TPM) | CV | τ-Value | Tissues Breadth | ||
|---|---|---|---|---|---|---|---|---|
| 2.430201 | 1.682933 | 7.293648 | 0.0 | 1.058121 | 0.706029729 | 12 | ||
| TPM: Transcripts Per Million; CV: Coefficient of Variance; τ-Value: Tissue Specificity Index | ||||||||
| SRA Accession | Layout | Bases (MB) | Spots (Millions) | Tissues | Description | Release Date |
|---|---|---|---|---|---|---|
| DRR018233 | PAIRED | 7285.43 | 36.43 | Callus | Callus of Japonica cv. Norin 8 mutant | 24/3/2017 |
| DRR018241 | PAIRED | 9132.87 | 45.66 | Callus | Callus of Japonica cv. Norin 8 mutant | 24/3/2017 |
| SRR1985021 | PAIRED | 9091.45 | 45.46 | Seedling | mhz1 with ethylene treatment from Oryza sativa | 23/4/2016 |
| DRR018237 | PAIRED | 11548.24 | 57.74 | Callus | Callus of Japonica cv. Norin 8 mutant | 24/3/2017 |
| SRR1460120 | PAIRED | 8778.15 | 43.89 | Shoot | MET1-2_mm_homozygote | 24/7/2014 |
| SRR1743009 | PAIRED | 6796.2 | 67.96 | Endosperm | Endosperm | 6/1/2016 |
| SRR1777241 | PAIRED | 7893.57 | 39.08 | Stem | SAMN03299206 | 3/1/2017 |
| SRR2638780 | PAIRED | 6298.39 | 31.49 | Callus | Callus | 7/11/2016 |
| SRR3015592 | PAIRED | 6855.59 | 22.85 | Leaf | the first Leaf & plus 1hr shade | 19/12/2016 |
| SRR1985031 | PAIRED | 5993.15 | 29.97 | Seedling | mhz3 with air treatment in seedling | 23/4/2016 |
| SRR1005329 | PAIRED | 7166.59 | 35.48 | Shoot | Shoot_21d+1h -Pi_r1 | 20/11/2013 |
| DRR001551 | SINGLE | 21742.82 | 215.28 | Flowers | Pre-anthesis Nipponbare Stigma | 28/3/2016 |
| DRR018245 | PAIRED | 14400.78 | 72.0 | Callus | Callus of Japonica cv. Norin 8 mutant | 24/3/2017 |
| SRR768640 | SINGLE | 578.21 | 11.34 | Leaf | Rice Leaf Segment | 22/7/2015 |
| SRR3440988 | SINGLE | 4058.12 | 27.05 | Panicle | Heading stage | 18/4/2017 |
| SRR1985026 | PAIRED | 3449.95 | 17.25 | Seedling | Ethylene responsive mutant mhz7 from Oryza sativa | 23/4/2016 |
| SRR1743007 | PAIRED | 6836.12 | 68.36 | Endosperm | Endosperm | 6/1/2016 |
| SRR2174483 | PAIRED | 5934.11 | 29.38 | Aleurone | Aleurone layer | 19/12/2016 |
| SRR1178906 | PAIRED | 41497.84 | 207.49 | Panicle | SAMN02649583 | 3/3/2014 |
| DRR018238 | PAIRED | 11395.13 | 56.98 | Callus | Callus of Japonica cv. Norin 8 mutant | 24/3/2017 |
| SRR1743012 | PAIRED | 5762.02 | 57.62 | Endosperm | Endosperm | 6/1/2016 |
| SRR1777242 | PAIRED | 3628.23 | 17.96 | Stem | SAMN03299206 | 3/1/2017 |
| SRR1985020 | PAIRED | 3774.84 | 18.87 | Seedling | Ethylene responsive mutant mhz1 from Oryza sativa | 23/4/2016 |
| DRR018246 | PAIRED | 17291.27 | 86.46 | Callus | Callus of Japonica cv. Norin 8 mutant | 24/3/2017 |
| SRR1743011 | PAIRED | 5571.11 | 55.71 | Endosperm | Endosperm | 6/1/2016 |
| SRR3015594 | PAIRED | 5963.69 | 19.88 | Leaf | the first Leaf & plus 1hr shade | 19/12/2016 |
| SRR352187 | SINGLE | 952.3 | 23.81 | Panicle | post-emergence inflorescence | 2/4/2012 |
| DRR018236 | PAIRED | 7754.81 | 38.77 | Callus | Callus of Japonica cv. Norin 8 mutant | 24/3/2017 |
| SRR1743010 | PAIRED | 6419.3 | 64.19 | Endosperm | Endosperm | 6/1/2016 |
| ERR789555 | PAIRED | 2707.34 | 13.4 | Seed | Seed development and heading date + 14days | 2/4/2016 |
| SRR3129145 | PAIRED | 4232.23 | 23.51 | Spikelet | Rice spikelets & Anther development stage 7 (S7) | 23/9/2016 |
| SRR2638781 | PAIRED | 26319.9 | 87.73 | Panicle | 0-5.0 cm Panicle | 7/11/2016 |
| SRR1985046 | PAIRED | 4844.94 | 24.22 | Seedling | mhz5 with ehtylene treatment in seedling | 23/4/2016 |
| SRR2089751 | PAIRED | 9950.12 | 49.75 | Leaf | cold stress at 4 deg celsius | 8/7/2016 |
| SRR1738250 | PAIRED | 7338.38 | 73.38 | Endosperm | Endosperm | 27/7/2016 |
| SRR1449240 | PAIRED | 12176.69 | 60.88 | Shoot | MET1-2_WT | 24/7/2014 |
| SRR3098742 | PAIRED | 13896.14 | 55.14 | Seedling | Two-weeks-old | 23/1/2017 |
| SRR1777239 | PAIRED | 9554.37 | 47.3 | Node | Nodes I and II | 3/1/2017 |
| SRR1460119 | PAIRED | 9899.03 | 49.5 | Shoot | MET1-2_Mm_heterozygote | 24/7/2014 |
| SRR2295904 | PAIRED | 6198.75 | 30.69 | Callus | Callus | 16/9/2016 |