IC4R Information Commons for Rice

Gene Annotation in IC4R 1.0

Gene Accession Os01g0197700
Location Chr1:5270449-5275585 (-)
Synonym CKX2;Os01g0197700;LOC_Os01g10110;B1046G12.8;OsJ_00744;P0419B01.20;IC4R-OSJ01G086600
Organism Ehrhartoideae / Oryzeae /Oryza
Length (bp) 5137
IC4R Links Expression; Variation; Literature; RiceWiki ; IC4R 2.0
Sequence [Download] [View]
Accession Length Location GC content Purine content Sequence
Os09t0552900-00 171 Chr9:21907615-21908009 (+) 50.88 49.12 [Download] [View]

Methylation profile

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QTL/Gene sp1a
Major category Morphological trait
Category of object character Panicle/flower
Character spikelets per panicle
Marker Mixture
No of marker for position determination 2
Location Chr1: 4796155-5760871
Mapping method C)Interval
Population RIL
No of plants 241
LOD 14.2
Parent A Zhenshan 97
Parent B Minghui 63
Direction ( Parent ) A
Explained variance 5.79
Additive effect 7.04
Year 2001