IC4R Information Commons for Rice

Gene Annotation in IC4R 1.0

Gene Accession Os06g0625900
Location Chr6:25238336-25240222 (-)
Synonym HAK10;Os06g0625900;LOC_Os06g42030;OSJNBa0072A21.17;IC4R-OSJ06G377400
Organism Ehrhartoideae / Oryzeae /Oryza
Length (bp) 1887
IC4R Links Expression; Variation; Literature; RiceWiki
Sequence [Download] [View]
Accession Length Location GC content Purine content Sequence
Os06t0138600-02 1149 Chr6:2040042-2041334 (-) 69.1 42.65 [Download] [View]
Os06t0138600-01 1149 Chr6:2039736-2041427 (-) 69.1 42.65 [Download] [View]

Methylation profile

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QTL/Gene qREP-6
Major category Resistance or Tolerance
Category of object character Other soil stress tolerance
Character root elongation under phosphorus deficiency
Marker SSR
No of marker for position determination 2
Location Chr6: 24522521-31089535
Mapping method B)Fine
Population F2
No of plants 752
LOD 95.2
Parent A Nipponbare
Parent B CSSL29
Direction ( Parent ) -
Explained variance 54.5
Additive effect 3.4
Year 2008