IC4R Information Commons for Rice

Gene Annotation in IC4R 1.0

Gene Accession Os07g0160100
Location Chr7:3219923-3229237 (+)
Synonym YAB1;FIL1;Os07g0160100;LOC_Os07g06620;IC4R-OSJ07G051900
Organism Ehrhartoideae / Oryzeae /Oryza
Length (bp) 9315
IC4R Links Expression; Variation; Literature; RiceWiki ; IC4R 2.0
Sequence [Download] [View]
Accession Length Location GC content Purine content Sequence
Os03t0368950-00 228 Chr3:14469915-14470650 (-) 68.86 63.6 [Download] [View]

Methylation profile

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QTL/Gene qSNC-7
Major category Resistance or Tolerance
Category of object character Salinity tolerance
Character Shoot Na+ concentration
Marker RFLP
No of marker for position determination 2
Location Chr7: 2634435-4576229
Mapping method C)Interval
Population F2
No of plants 133
LOD 7.66
Parent A Koshihikari
Parent B Nona Bokra
Direction ( Parent ) A
Explained variance 48.5
Additive effect 0.51
Year 2004