ENST00000307548.2
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000307548.2 |
Source |
Gencode19 |
Same with |
lnc-CTTN-4:1,NONHSAT022671 |
Classification |
intronic(AS) |
Length |
1683 nt |
Genomic location |
chr11+:70708895..70711220 |
Exon number |
3 |
Exons |
70708895..70708972,70709390..70709666,70709893..70711220 |
Genome context |
|
Sequence |
000001 TTTTGGATCC TTTGGGATTC CCCCACGGGA GTAGTCAACT GGGCAGCAGG ACACAGTCTA GAGTCTAGTA AACTGGAGCT 000080
000081 GATCTAAGCA CCAGAACCTG AGCTGATGGC ACAACTGCCC AGTGCCCAGA TGCCGGCTCC CCGAACACAG CCCGACCTCA 000160 000161 TCCTGGTTCA TCCAGTGCTG GCCCTGTCTG GACGAGCCCC AAGCATCCTC TGCTCGGTGC CCTGGGACGC CTGTGAACTC 000240 000241 CTGGCCACGG CTATGTGGTG GAAGACACGG ATTCTGTGGG GGGTTTTCCT TATCTCTAGG ACTCGCCCAC CTGCTCCCAT 000320 000321 GCAAATCCTC ATTTTAACTC TGGATCCCAG TGAAGGAGAG GTGTGTTGTA AGAAGAGGAA ACCTGGACAG ACAGGAAGAA 000400 000401 ACCGAGTGAG GATGACGACA GCCACCTGCA AGCCAGGAGG AGAGGCCTCA GGAGAAACCA GCCCTGGGAC ACCCTAATCA 000480 000481 CAGGCGTCCG CCCCCACAAC GGTGAGAGAA TGTTTCTGAT AAAACCACCC AGTTTTTGAT ACTTTCTTAT GGCAGCCCCA 000560 000561 GCAAACAAAA ACTGGCTCCA TGGCCTCCCC TGTCCTGGCC CCTCAGTCTC TACGACCTGG GCACCTTGCA AGCACAAGAA 000640 000641 AGGGACCCTC CAGTTCGGGG TGCCCACACA CCTTGCTTTC TTCCTTGAGC TCTGGTCACC AAGGAGGCAA AGGGGAGAGA 000720 000721 GGCTTCCAAG GGGCCCATCA TTTGGAAAGG GAAAACCAGC TTCTGTTGCC GTGGCAACTC CACTGGGATG CTCTGCTATT 000800 000801 TGCACATTTT GAAATTGGAG GTGGGTAGTG AGAAGGGAAA AAGGAAAGAA AAATTGAGGG AGATGAGAGT ATCCAGGGCA 000880 000881 AAAGAAAGGA GAGAAAAGCA AATGAAGTTT AGGAAAAATC CAGCTTCGGA CAGGTGACCC TGACAGTGCT TAATGACCTC 000960 000961 AGATGAGTCC CAGGGCCGCG GGGACTTCCC CATTAAGTCA TGGTGGCTCC AGCCAATGTC AGCCCAGGTC CCCCACTGTC 001040 001041 AGAGAGGAAA CAGAGGCTCG AAGATGAGAA GTGCCCTGCA CAAGGTCACC TTGTGACTTG GAGGATTCTC CAGGTAAAAG 001120 001121 CAGCCGTATT GGGGGAAGGC CTCTATTCTT GTAATGAACC AAACGTTTGT GCCAACCCCC CAAATTCATA TGTTGAAGTC 001200 001201 CTAACTCCCA ACGTGATGGT TTTATGAGGT GGGGTCTTTG GGAGGTAAGC AAGTCATAAG TGTAGAACCT TCATAAATAG 001280 001281 GATTAATGTC CTTATAAAAG GGACCCCCAG GACCTGGATA TGGTGGTGTG AACCTGCAAT CCCAGTGCTT TGGGAGGCTG 001360 001361 AGGTGGGAGG ATCCCTTGAG GCCACAAGTT TGAGACCAGC CTGGGCAACA TGGCAAGACC CCATCTATAC AGAAAATACA 001440 001441 AAAATTAGCC AGGTATGGTG GTGCACACCT GTAGTCCCAG CTACTTGGGA GGCTGAGGTG GGAGGATGGC TTGAGCCCAG 001520 001521 GAGTTTGAGG CTGCAGTGAG CCATGATTGC ACCACTGCAC TCCAGCCTGG AAAACGGAGT GAGAGTGTCT TAAAGAAAAA 001600 001601 GGGGCCCTAG AGAGTTCTCT GGTACCCTGG TTTCAGACTT CTAGCCTCCA GAATGGTGAG AAATAAATAT GTATTTTTTA 001680 001681 CGA |
Predicted Small Protein
Name | ENST00000307548.2_smProtein_548:811 |
Length | 88 |
Molecular weight | 9325.813 |
Aromaticity | 0.0919540229885 |
Instability index | 47.0494252874 |
Isoelectric point | 10.3263549805 |
Runs | 11 |
Runs residual | 0.0118226600985 |
Runs probability | 0.0495896966486 |
Amino acid sequence | MAAPANKNWLHGLPCPGPSVSTTWAPCKHKKGTLQFGVPTHLAFFLELWSPRRQRGERLP RGPSFGKGKPASVAVATPLGCSAICTF |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEELLLHHHHHHHHHLLLHHHLLLLLL LLLLLLLLLLLEEEEELLLLLEEEEEL |
PRMN | - |
PiMo | - |