ENST00000313156.3

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000313156.3

Source

Gencode19

Same with

lnc-CHST12-1:1

Classification

intergenic

Length

2067 nt

Genomic location

chr7+:2477398..2487485

Exon number

2

Exons

2477398..2477555,2485577..2487485

Genome context

Sequence
000001 CACACACACA TCGGGATATT TTTCTTGTTT CCTTCTTCCA GAGGGTGTAG GAGTTGTGTT CCAAGTTTGT TCCTGCAAAC 000080
000081 CCTCCGATGA GGCCAGCTGC ATTCATCGGG GCCTGGATGG CCGCACCTCT CTCTCCCCGC CCTGTCTCCT GCACTCAGTC 000160
000161 TCATTTCCAG ATGGGGAAAG GGAGACCCAG GCTGCGGTGA CCCACTGAGG CACAGGATCA GTGAGAACCC AGCCCTGGCT 000240
000241 TTGCCCAGAC CTCTCAAGGG CACTTCGTGG GACCATTGCC GGCCGTTGTG GCATCTGTCC CTGGCCTTGC CCCCATCCGT 000320
000321 CTCTGCACAG CCCAGGTGGG TCCGAGCCAG CCCCAGGTCT CCAGGGTCCC AGCCCAGCCT CTAGAAGAGC CAGCAGCAGG 000400
000401 GCTGGAAGGG AGAGCACATG CTGGGCCTTG GGGCTGCCTT GGACCTCAGG CCGTTGACAA GGAAAAGCGG AGAGTTGGGA 000480
000481 AAAAAGGACA AATAGCTGAG CGCCAGCCGC AGTCTGGGGG ACGGGAGCCT CGTGCGACTC TCGGAGTGCT GGCCAGATTG 000560
000561 GCAGAGGGGA GGAGAGAGGA AAAACCCAGG CTCTGAGGAA AAACCTCTCC AGCCCAGCGC GTGGCCTGGC ATTAACCCAC 000640
000641 TGCAGCCCCA GGAAGTGGTT CCACCCCAGG CAGCCAACAA GGCGGTGCCT GAACTATGTC TGTGGATGAC GGAGCCACGA 000720
000721 CCTGTCCCTC AGGGCTCAGC GCTGCGGCTA TGTCCAGGGA CCCCTGGCTG TGCCCACGTC GGGGCTTCCC GTTCCTTACC 000800
000801 TGCCATGAGA ATGAGATGTC CAGGGACCTC CCTGCTCCAG CTGGGACCTG TGGGGCTTTG TCTGTTGTCC CGAGCACCTT 000880
000881 GGAGATGTCA TTTCTAACAT TTTAACCCAG GAATCCCCCC ACCAAGGGAC AGAGTGCAAG GACATGATCG AACAGAAAAA 000960
000961 GTTCTGGTAC AAGATCAACC CCGTGGGGTG GTGAGTGCTG CAGCCCCGGG CCTCACATCC TGCCGTCCCT GTGGGAGATT 001040
001041 GGAGCGGTCC CAGTGCCCAC CGCTGATTCT CTGGCTCCAG CAACCCCTCC AGGTGGATCC GTCCCACGCA GCCTGGCCTG 001120
001121 AAACACTGCC CAGCCACTGG GTCCAGTAAG ACAGAGCCTC GAGTCATTCT GCCAAGAGGA TCCAGAAACA CAGACTTTTT 001200
001201 CTGGGGTCCT GGAGGCTTCT GGCCCATGGG GAGCCCCTGG GTCCCAGCGA TCCAGCCCTG ATGTGCTGAG GGTGCAGGGC 001280
001281 CCAGCTGCAG AGCAGAGGAG AGTGGCCCCC AGGGACCAGC AGCACGAAAG GCACACTGAG GCACACTGGC AGGCCTGGGC 001360
001361 TGCAGAGAGC CTGAAGGTCA TGGGGTAGCT GGTGGAAGCA GGAAGACCCC ATACAGCAGC GACCACTGAG GCTGGTGCTG 001440
001441 CACTTTCTCA GGGAATTGAG TGTGGGCTCC CACCATCCCG GCCACTGGCT TCCTCCAAAG CCTCCTCCTC TTACATCAGC 001520
001521 AAACCTTCTG TTCGGTGACC CCCTCAGTGA CCCTCTGTGC TTGCCTTCGT GGTCTTCCTC ATGGAGGATT TCGGGTCAGC 001600
001601 GTGGGGGTCA GAGGTCATTT CCCATACCCC CTCAAAGGTA CTTCTTGCTG TGGTCCCCAC ACTCTGACAC CCTCTTCTGA 001680
001681 AATGAACACT TTTTTGTTGT TGTTGTTGAG ACAGAGTCTT GCTCTGTCGC CCAGGCTGGA GTGCAGTGGC ACAATCTTAG 001760
001761 CTCACTGCAA CCTCCACCTC CCAGGTTCAA GCGATTTTCA TGCCTCAGCT TCCCGAGTAG CTGGGATTAC AGGCATGTGC 001840
001841 CACCAAGCCC AGCTAATTTT TGTATTTTTA GTAGAGATGA GGTTTCACCA TGTTGGCCAG GCTGGTCTCG AACTTCTGAC 001920
001921 CTCAAGTGAT TCGCCCGCCT CGGCCTCCCA AAGTGCTGGG ATTACAAGCA TGAGCCACTG CGCCCGGCCA CAAACACTTT 002000
002001 TTTTTTTTTA AACAAGTGAA AACAAGTTTA TTAACAAAGT TAAGAAATAA AGAATGGCTA TTCCATA
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Predicted Small Protein

Name ENST00000313156.3_smProtein_695:904
Length 70
Molecular weight 7309.2985
Aromaticity 0.0724637681159
Instability index 79.6072463768
Isoelectric point 4.64642333984
Runs 9
Runs residual 0.0088965418281
Runs probability 0.0360360360361
Amino acid sequence MSVDDGATTCPSGLSAAAMSRDPWLCPRRGFPFLTCHENEMSRDLPAPAGTCGALSVVPS
TLEMSFLTF
Secondary structure LLLLLLLLLLLLHHHHHHLLLLLLLLLLLLLLEELLLLLLLLLLLLLLLLLLLEEEEELL
LLEEEEEEL
PRMN -
PiMo -