ENST00000315293.2
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000315293.2 |
Source |
Gencode19 |
Same with |
lnc-FAM27B-3:1 |
Classification |
intergenic |
Length |
2566 nt |
Genomic location |
chr9-:67017400..67032072 |
Exon number |
4 |
Exons |
67017400..67019064,67026663..67026815,67029157..67029264,67031433..67032072 |
Genome context |
|
Sequence |
000001 AGTGCTCCTG CTGACCTTCC CTGTCTGCAG CCCAGCTTTG GACTGTGGAG ATGCCCTCAG CCTCTACTCA GTGGCTCCAG 000080
000081 CCTCATATTT GCGTGCTATA CCTTTAACCT CAAGTTCTCT TGCTGCTAAC TTAAGCTGTG ACTGTCCAGG ACCTGCACAC 000160 000161 ACACATATAT GCACGCATGC ACACACACAC ACACACACAC ACACGCAGAA GGTGAACACA CAGGATGAGG CCCTGAAAAC 000240 000241 TCATTTCACC CGTGTACCTC ACCCAAAAAT TCCCCTTTGT ACTCCTATCT TTATCTCTAA CAGACAGCAT GAAGGTAGCC 000320 000321 CGAAGTCCCC TCACCCTGTC TGTCCTCCTG ATTCTCTAGC CCAGTTCCCT CTAGCTCCAG CACAGACTCT TATCTCCAGC 000400 000401 CCTGACTGCT GAAACCCTCC AGCCCCAGCT CCAGCCCCTC AGGAGGGGAC TGCGTGGGAG GAATGACTCC AGCAAGCCGG 000480 000481 CAGCTGACCC GTGTCTGGCC TGCATGCCTC CCCCTGTGGT CCACTGCCGG TGGTCTTCAG CTCTCTCCTC GTCCCACCCC 000560 000561 CATGGTCTGC TGACAGCCCA GCCCAGTGCA TCCCTGCCAT CTCTGCTCTA CCGCTGGTCC TCCCAACAAC CAACTTACAG 000640 000641 CTTCCAATTG TGGACAAGAT AAGGACCATT GCCCAGGCTG TCTATGGAGC CAAAGATATC GAACTCTGTC CTGAGGCACA 000720 000721 AGTCAAAATA GATCGTTACA CTCAGCAGGG TTTTGGAAAT TTGCCCATCT GCATGGCAAA GACCGATCTT TCTCTGTCTC 000800 000801 ACCAACCTGA CAAAAAAGGT GTGCCAAGGG ACTTCATCTT ACCTATCAGT GATGTCCGGG CCAGCATAGG TGCTGGGTTC 000880 000881 ATTTACCCTT TGGTCGGAAC GGTGCACCAC TGACATCATG GCTCGGCTGG ACTCTGGAAA GCAGGAAATT GCTGGAGCAT 000960 000961 GTTTGGGCAT CAATGATGTC ATCCGCTACG AATGCCGGGT GGGGTTACTG GACTGAGGGC CATGAAAAAA GAAAGCTGCG 001040 001041 GCCCTGCCCC GTGGACTCAC TGCCATTCTG TTCTTTCTCA CGTTTCAGTT CAGCTCACTT TGTTTTCCGT CCCCCTCCCT 001120 001121 CTACTGTAAA AGTATGTACT CAGTGTTTCA TTTCCTGCTG GATCTGATTC AGGTCAGTGA TGAAGTTCTT TGCGAGCTCA 001200 001201 GTGGGGAGGC GTTTCCTCCC TTTCATACCG GCCCTGCTTA GGGATGCATG GTTGGTTATA TACTTGCTTC ACTCGGTTAG 001280 001281 GCATGGAGGA GAATTCATTC AGACCTCATA GGTTTAAATC AAATGCATGA CCCTTCACAT TTTCCAGAGA TTTAGACAGT 001360 001361 TACAGTGAGA CAATTAAACA TTCACCCCCC AAGCTGCACT TGGAGATGTG TAAGCAGTAA TGTAGTCATG CGCTCCCCAT 001440 001441 GATATGAGAG TGTGCAGAAT GCCACTCCCC ACAGCAGGTC CACCAGGACC TCCTCAGGGA GCATCTTGCC TACAAAATCA 001520 001521 CCCATCCCTT TTCCCCCACT TTCTTCACTT TCCCTACGTT TCCACTCCCA CACCCACAAA TAAACAAAGA AACTTTGAGC 001600 001601 TTATTTTACA AAAGTCTTTG AAATGGCCCT CCTCTCTCCG ATGCTCCTGG GCCCTGGTTT GGCCCCATCT GTGCAGTCTC 001680 001681 TCTGATGAGT GTGAAATAAG CCAGGTTTGG CTCATGCTCT CCCTGTGAGC TTGCTCTCCC CGTGAGCCTG CCCTCTCCAT 001760 001761 CTGGCCTCAC TTTGTTTGTG TCCCTGGGTC CTTTGTCTCT GATCCTGGGA TCCTGGTGGT TTCCTCCTCC CCGCCCAGCT 001840 001841 TGGGTCCTTT TCCCCAGGGT TCTTCCCTAT CTCTACATCA GAATTTCCTG CTTTCTCCCA AATATGCATT TCCCTGGCCC 001920 001921 AGGCATCCAT TGCTTCCTCT CATCGTGAGG TCCCTGCAGC AGACTGCCAA TGGTGTTGTG GCCATGCCTT CCTCCACAAC 002000 002001 CCAGGGAAAG CTACATGTGT GTCTGTCCCA TAGGGAAGGA GTCATCCCTG TCTCTTCAGT GTGGCATGTT CAGGAGGAAG 002080 002081 GAAAGTAACC AGCGTCATTC TCAATTTACG GAAACTGTTT ATCATATTGA CAAGAAGAAG AAAGCTTTGC GACTCATGAG 002160 002161 AATGATGTTT TCTTCTCTGG TACATAAGGT TATGTAGGTC CAATCCATTG TGTAGAAGAT CTTTTCTCCC TTAATGGGAT 002240 002241 GTACACTTAT TTTTAGCACA AGTATAAAAC TACTTTAAAT GAAGTCAGCC TCAGCCAGGG AAATATGCTG AGTAATAATG 002320 002321 TTGCCAGGTA CTATACCACT GAGTTGAGTT TGCAATTCAC TGCTATTAAT CCCTGCATGT TAGTTCTGAA TTTTTACTCT 002400 002401 TTGCATACGT AGAAAAAATG GTGTTTCTCT TCAGAGTCAA GGAGGGAAAA AAGAAAAGTT AAAAGACACT TATAACACTT 002480 002481 TTGTGTCCAC CCCTAAAATC AGCATATTGA TCTACTATTT TTCTAGGTAT TGATGGAATA TTGACTCATA TACTTTCATA 002560 002561 CAACTG |
Predicted Small Protein
Name | ENST00000315293.2_smProtein_503:661 |
Length | 53 |
Molecular weight | 5878.6145 |
Aromaticity | 0.115384615385 |
Instability index | 88.0057692308 |
Isoelectric point | 10.0443725586 |
Runs | 8 |
Runs residual | 0.00347674923946 |
Runs probability | 0.0452548136372 |
Amino acid sequence | MPPPVVHCRWSSALSSSHPHGLLTAQPSASLPSLLYRWSSQQPTYSFQLWTR |
Secondary structure | LLLLEEEEELLLLLLLLLLLLLLLLLLLLLLLHHHEEELLLLLLEEEEEEEL |
PRMN | - |
PiMo | - |