ENST00000334146.3
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000334146.3 |
Source |
Gencode19 |
Same with |
lnc-TLCD2-1:10 |
Classification |
intergenic |
Length |
1365 nt |
Genomic location |
chr17-:1614805..1619504 |
Exon number |
4 |
Exons |
1614805..1615693,1616997..1617308,1617665..1617747,1619424..1619504 |
Genome context |
|
Sequence |
000001 AAGAGACAGC GCCGCCGGCC GTGGGGAGCG GACGCAGTGA TTTGCTCCCC CTCGTGCAGC AACCCCCACA CCCAGCACCA 000080
000081 GGCCCCCAGA ACTCTCCTTC CAGCTGAACT CCCTGGGAAC AAGTCAGTTG GGCTGATCAC TGAACTCACA TTTCTGGACC 000160 000161 TGAGGAGCCT GTTCCTCTCA CGCCCTCACC TGGCTGAGCC GCAGTAGTTC TTCAGTGGCA AGCTTTATGT CCTGACCCAG 000240 000241 CTAAAGCTGC CAGTTGAAGA ACTGTTGCCC TCTGCCCCTG GCTTCGAGGA GGAGGAGGAG CTGCTTTCCC CATCATCTGG 000320 000321 AAGGTGACAG AAATGGGCTG GGAAGGTCCG AACAGCAGGG TGGATGATAC GTTTTGGGCA AGTTGGAGAG CCTTTGCCCA 000400 000401 GATTGGCCCA GCAAGGAGCG GTTTTAGATT AGAGACACTG GCTGGATTGA GGAGTAGAAG GCTCAAACAA CCCAAGGCTT 000480 000481 TCTGCCTCCG AGATGTGGCA CCATAGTGCG GTGCCCTGTG GCTTCACCGC CCTACTTCCA CCTCCGCCCA GCCTGTAATG 000560 000561 TTTATATAAG CAGCCTCAAG GACCAAGAAC CATCTGCGAA AGGACACACA CAGGAAATTC ATAAAAGAAA TCTGAATGGA 000640 000641 TAAAACCATG AAAAAAAGTA TGCTTCATTA GTAATTAAAG AAAGGCAAAT AGAGCTGGAA GCATTTTTCC CTTAGCAAAC 000720 000721 CATAACAGAA AAAAATAAGA CCCAATATTG GCAAAGAGAC TACTGAAAAA ACATTCCCAT ACATTGCGTG TGGGAGTATA 000800 000801 CATCGGTGCA GGCTTCCTGG ATGACAGTTG GGTGATATGT GTCATGTGGC CTAAAAGCCT CCATGTCATT TGACCTACGA 000880 000881 ATTCTATCTT TGGGAATTTA TCCTAAGAAA ATACTTAAGG ATTTAGTTAG TGATAAGATG TTCATCCCAG CATTGCAATG 000960 000961 GAGAAAAATG GGAAGCAATG GTTTGGTTGG GAATTTATTC CTTTTCTGCT GTAACGAAAG TTTGCAATAG GGGATTGCTT 001040 001041 AAGTAAATTA TTGTATCTCC ATCCAGATGG TGGAGTACCG CGCAGACATT AAAAGTCATG TAAAAGAACA TCTGACTGAA 001120 001121 AGAAAAATGC TCCTTGAATA TTAAAAGGTT GTAAAAATAG TGCATGTTAT GTGATTTCAA TTTTGTTTTT TAAAATATGG 001200 001201 GTGTATGCTT GTATACGTAG AGCAGATAAA AAAGACGGAA GGCATACTAA AAAATGTTGA GTGGTTATCT TTGTATGGTG 001280 001281 GAACAAAGTC ACTGTAATTT TCATCTTTGG TTTTTCTGTA ATTTCCAAAT TTTCCACATT TTGTATTTCA TATAATATAA 001360 001361 TTTAA |
Predicted Small Protein
Name | ENST00000334146.3_smProtein_332:505 |
Length | 58 |
Molecular weight | 6478.3477 |
Aromaticity | 0.122807017544 |
Instability index | 61.4 |
Isoelectric point | 11.2123413086 |
Runs | 9 |
Runs residual | 0.00394736842105 |
Runs probability | 0.0473709003121 |
Amino acid sequence | MGWEGPNSRVDDTFWASWRAFAQIGPARSGFRLETLAGLRSRRLKQPKAFCLRDVAP |
Secondary structure | LLLLLLLLLLLLLHHHHHHHHHHHLLLLLLLLHHHHHHLLHHHLLLLLLEELLLLLL |
PRMN | - |
PiMo | - |