ENST00000415437.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000415437.1 |
Source |
Gencode19 |
Same with |
lnc-NUF2-3:1,NONHSAT007247 |
Classification |
antisense |
Length |
2633 nt |
Genomic location |
chr1+:163131465..163182813 |
Exon number |
4 |
Exons |
163131465..163131631,163132576..163132666,163176487..163176630,163180583..163182813 |
Genome context |
|
Sequence |
000001 AACTGCAATC ATGAGTCTTC AGAACACCTT ATGTTCACAT TCCCTCATAG TGCCACAGAC CCTCCTTTTC TTGTGAACTG 000080
000081 GATAATCACA TACCTGCAGC CCCCTTCCCT TATTGATATC ACCTTCAAAA ATTGAAGAAA TGTCAACATT GGGGAAGAAG 000160 000161 AACACAGCAG GATGTGTCAA GTGGAGCTGA TATTGTCCGG GAAAAATGGC TGACTGCACA CTCTTCGGCT CACCCAGCTC 000240 000241 GAACTCTTGC ATTATGATGA GACAGCAACA AGGCACCATC TTGGAGAAGC AGAGAGCAGC TCTCATCAGA CACCGAACCT 000320 000321 GCTGGCACCT TGATCTTGAA CTTCTCAGCT TGCAAAACTG CCAGAAATAA ATTTCTTTTG TTTATAAAGC ACCCAGTCTC 000400 000401 AGGATTTTAT CTTCTATGGA ATTACCTCCT CTAAGAGTTT TCTCCCAAGG CAAACTGCAT GAAAGTCAGG TCTCTACGTT 000480 000481 GGCTATGCCT GGCTCTACTG TATACACTGG CTTTTGAACC TGGTCATATG TTGGTGTCTT GGTTGGAATC TGGAGAATGG 000560 000561 AGTGGGGGAA TGAATAGTTT AAATCTGGAT TATGCATATG GAAGACTCAA GCTAAGAGCA TTTAGGAATC CTGAATTAAG 000640 000641 CCAAGAGTAA ACAGGAGTGA AATGGGTAAG GTTTGATTCA GGTTTATCTA AGTTAATTGA CTGAAAAAAT ACCCTGAAGA 000720 000721 TCATGATGTC AGAGAAGTTG TGGGTGCAGA ACTCCATTTG TAAGAAATTT GCTAGTGAAT GGGAGTTGAG GTAGTTAAAG 000800 000801 CAATGAGCAA AGATTTCTTT TTTCAGGAGG TTAAGGGTGA TTGGAAGGAG AGAAATGGTA CGTTAACTTA AGGAGCCATA 000880 000881 AGGTTAATTA TGTTTAATAG GAGAATGAAA TGTGAGCAGA GTGAATGGAG TGGGAAGGCT GAGGTTTGGA AATGTGTAGG 000960 000961 TCCATTCTGA GACAAAGTGA AAAGAAAATG AATAAAATGA TGATTCTAAG AAAACGTATT AAGGGAACAA AATGTGAGGA 001040 001041 GTCTGGGGGC TTTTTTGGTA AGTCCTTCTT AGTTGAGGAG GTGGTGAAGG CATAGAAGTT TAGAAAGATT CTCACTAGCT 001120 001121 CTTTTCGCTT GGTTCATGAA AGAATCGTGA CTGGAAAACT ATATTCTGTT ACATTATTAA ATGTTTTGAT AGAATTTTCT 001200 001201 CTGGGGGATG GCCTCACTGT ATCTAAACTC CACTCAACTA TAGAATAAGA TGATTCTAAT GGAAATTCCA GGAATTTCTC 001280 001281 ACCACATATG ATATATGAGA AGTAGGATGG AGTTGGGTTC AGGCTCCATG CTTTTTGCCT CTGGATAATA TTTATAAACA 001360 001361 AGGAGTCCTA CTCTGTCTCT GAAAAGAACA GTCAACATAG TTTTATGAGA GCTGCTTTTC TGGTATAATT ACTCTAATGC 001440 001441 TGTATTTATC CTCAAGGTCA GTAGTGGCCA TTAAAAAAAG CTGTCCCTTT CCCTGGAGAA CAGCATCCTC CCCCGACAAA 001520 001521 TAATTTCTGT TGGAAGAACA TTCTGTAAGT CCATGTTCTC ACTACAAATA TTATCCAATG TAGTACTGAA GGACATTTTA 001600 001601 AAAACAAAGT CCTTTTTGAT CTTTCTGAGC CAAAATGTCT TCGACTTAAT TCCTTTTCCA CAAAATAAGA AACATCTTTT 001680 001681 GGATTGAGGA TTAGTCTTGC AATTCCTACT CTCCTTCTTC ACAAATGTCT TTATTTAGTT TTGGTTCCCA TGTCTGAATG 001760 001761 AGTGATTTGA ATAGATGGCC TCTAAGTTCC CTTCCATTTC TAACATGCTG GGGCTCTTTG AGTCTGGGTG ATTACAGCTA 001840 001841 TTGTGTCTTA TTTCCTTGGT ATACACTAAG CTTCTTGAGG ATAAATAGGG AACATGTTTT ATTTGTCTTT GGGTCCCCCA 001920 001921 AAACATGTAG GCTGGAGAAC CTGTATAAGT AAATCTCTGT TACTGAAAAA AATACATAAG TTAATTAAAT AAATAGGAAT 002000 002001 ACCCACAAAT ATCATAGCAT TGCCTGGAAA TATTGTCTTA ATGAGAACTA GAAAAGAAAG GCTCTTCAAG GTGGACAAAA 002080 002081 CACCTAAGTA CATGGCTTGA TTCTCAAAGC ACCAAGGCAC AGGCACTGGC TCATCAGATA ACCAACCTCT TTTGGCTGTG 002160 002161 TGCTATTGTG CAGAACACAA CCTCCATAAC TGTGCTGGGC ATGCCTGCCA CTGACACACA GCATCTTAGC TCCAGTGAAG 002240 002241 CCTGAGGAGC AGGCTTCCTT ATAGCTCCCT CACTGTTCTG CATGTAAGTC AAGGGGACAG CTGTCCTGGG AGCCAATACA 002320 002321 CCACTAACCT AAGTATCTAG ACCACAGCCA CAAAATGATA TACACTCTCC TCCAATATAC TATTAGGGAT CAACACCATC 002400 002401 CTATATTATG TCTCTGTTTA CCTCAGGCAC CTGCAGAGGT AAAGCCTCAC TATTCATCAA CTATTAATCT CACACTATTT 002480 002481 TGTTCCAATT CCTTTTTCTC TTATATCCAT ATCACTGGCC CTCCTATATC TGTGTCTTTA TGAATTAGCT TATGCTCCCT 002560 002561 ATCTTTTTCT TCTTCTCTTT TCACTTCTAC CACTTCCTAG ACTTCAATGA AATTGAACTG TAGCTCACAC AAG |
Predicted Small Protein
Name | ENST00000415437.1_smProtein_1757:1951 |
Length | 65 |
Molecular weight | 7582.7554 |
Aromaticity | 0.1875 |
Instability index | 45.51875 |
Isoelectric point | 8.57000732422 |
Runs | 11 |
Runs residual | 0.02328125 |
Runs probability | 0.0668449197861 |
Amino acid sequence | MSDLNRWPLSSLPFLTCWGSLSLGDYSYCVLFPWYTLSFLRINREHVLFVFGSPKTCRLE NLYK |
Secondary structure | LLLLLLLLLLLLLLLEEEEELLLLLLEEEEELLHHHHHHHHHLLEEEEEEELLLLEEEEE ELLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLL LLLL |
PiMo | oooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiii iiii |