ENST00000415437.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000415437.1

Source

Gencode19

Same with

lnc-NUF2-3:1,NONHSAT007247

Classification

antisense

Length

2633 nt

Genomic location

chr1+:163131465..163182813

Exon number

4

Exons

163131465..163131631,163132576..163132666,163176487..163176630,163180583..163182813

Genome context

Sequence
000001 AACTGCAATC ATGAGTCTTC AGAACACCTT ATGTTCACAT TCCCTCATAG TGCCACAGAC CCTCCTTTTC TTGTGAACTG 000080
000081 GATAATCACA TACCTGCAGC CCCCTTCCCT TATTGATATC ACCTTCAAAA ATTGAAGAAA TGTCAACATT GGGGAAGAAG 000160
000161 AACACAGCAG GATGTGTCAA GTGGAGCTGA TATTGTCCGG GAAAAATGGC TGACTGCACA CTCTTCGGCT CACCCAGCTC 000240
000241 GAACTCTTGC ATTATGATGA GACAGCAACA AGGCACCATC TTGGAGAAGC AGAGAGCAGC TCTCATCAGA CACCGAACCT 000320
000321 GCTGGCACCT TGATCTTGAA CTTCTCAGCT TGCAAAACTG CCAGAAATAA ATTTCTTTTG TTTATAAAGC ACCCAGTCTC 000400
000401 AGGATTTTAT CTTCTATGGA ATTACCTCCT CTAAGAGTTT TCTCCCAAGG CAAACTGCAT GAAAGTCAGG TCTCTACGTT 000480
000481 GGCTATGCCT GGCTCTACTG TATACACTGG CTTTTGAACC TGGTCATATG TTGGTGTCTT GGTTGGAATC TGGAGAATGG 000560
000561 AGTGGGGGAA TGAATAGTTT AAATCTGGAT TATGCATATG GAAGACTCAA GCTAAGAGCA TTTAGGAATC CTGAATTAAG 000640
000641 CCAAGAGTAA ACAGGAGTGA AATGGGTAAG GTTTGATTCA GGTTTATCTA AGTTAATTGA CTGAAAAAAT ACCCTGAAGA 000720
000721 TCATGATGTC AGAGAAGTTG TGGGTGCAGA ACTCCATTTG TAAGAAATTT GCTAGTGAAT GGGAGTTGAG GTAGTTAAAG 000800
000801 CAATGAGCAA AGATTTCTTT TTTCAGGAGG TTAAGGGTGA TTGGAAGGAG AGAAATGGTA CGTTAACTTA AGGAGCCATA 000880
000881 AGGTTAATTA TGTTTAATAG GAGAATGAAA TGTGAGCAGA GTGAATGGAG TGGGAAGGCT GAGGTTTGGA AATGTGTAGG 000960
000961 TCCATTCTGA GACAAAGTGA AAAGAAAATG AATAAAATGA TGATTCTAAG AAAACGTATT AAGGGAACAA AATGTGAGGA 001040
001041 GTCTGGGGGC TTTTTTGGTA AGTCCTTCTT AGTTGAGGAG GTGGTGAAGG CATAGAAGTT TAGAAAGATT CTCACTAGCT 001120
001121 CTTTTCGCTT GGTTCATGAA AGAATCGTGA CTGGAAAACT ATATTCTGTT ACATTATTAA ATGTTTTGAT AGAATTTTCT 001200
001201 CTGGGGGATG GCCTCACTGT ATCTAAACTC CACTCAACTA TAGAATAAGA TGATTCTAAT GGAAATTCCA GGAATTTCTC 001280
001281 ACCACATATG ATATATGAGA AGTAGGATGG AGTTGGGTTC AGGCTCCATG CTTTTTGCCT CTGGATAATA TTTATAAACA 001360
001361 AGGAGTCCTA CTCTGTCTCT GAAAAGAACA GTCAACATAG TTTTATGAGA GCTGCTTTTC TGGTATAATT ACTCTAATGC 001440
001441 TGTATTTATC CTCAAGGTCA GTAGTGGCCA TTAAAAAAAG CTGTCCCTTT CCCTGGAGAA CAGCATCCTC CCCCGACAAA 001520
001521 TAATTTCTGT TGGAAGAACA TTCTGTAAGT CCATGTTCTC ACTACAAATA TTATCCAATG TAGTACTGAA GGACATTTTA 001600
001601 AAAACAAAGT CCTTTTTGAT CTTTCTGAGC CAAAATGTCT TCGACTTAAT TCCTTTTCCA CAAAATAAGA AACATCTTTT 001680
001681 GGATTGAGGA TTAGTCTTGC AATTCCTACT CTCCTTCTTC ACAAATGTCT TTATTTAGTT TTGGTTCCCA TGTCTGAATG 001760
001761 AGTGATTTGA ATAGATGGCC TCTAAGTTCC CTTCCATTTC TAACATGCTG GGGCTCTTTG AGTCTGGGTG ATTACAGCTA 001840
001841 TTGTGTCTTA TTTCCTTGGT ATACACTAAG CTTCTTGAGG ATAAATAGGG AACATGTTTT ATTTGTCTTT GGGTCCCCCA 001920
001921 AAACATGTAG GCTGGAGAAC CTGTATAAGT AAATCTCTGT TACTGAAAAA AATACATAAG TTAATTAAAT AAATAGGAAT 002000
002001 ACCCACAAAT ATCATAGCAT TGCCTGGAAA TATTGTCTTA ATGAGAACTA GAAAAGAAAG GCTCTTCAAG GTGGACAAAA 002080
002081 CACCTAAGTA CATGGCTTGA TTCTCAAAGC ACCAAGGCAC AGGCACTGGC TCATCAGATA ACCAACCTCT TTTGGCTGTG 002160
002161 TGCTATTGTG CAGAACACAA CCTCCATAAC TGTGCTGGGC ATGCCTGCCA CTGACACACA GCATCTTAGC TCCAGTGAAG 002240
002241 CCTGAGGAGC AGGCTTCCTT ATAGCTCCCT CACTGTTCTG CATGTAAGTC AAGGGGACAG CTGTCCTGGG AGCCAATACA 002320
002321 CCACTAACCT AAGTATCTAG ACCACAGCCA CAAAATGATA TACACTCTCC TCCAATATAC TATTAGGGAT CAACACCATC 002400
002401 CTATATTATG TCTCTGTTTA CCTCAGGCAC CTGCAGAGGT AAAGCCTCAC TATTCATCAA CTATTAATCT CACACTATTT 002480
002481 TGTTCCAATT CCTTTTTCTC TTATATCCAT ATCACTGGCC CTCCTATATC TGTGTCTTTA TGAATTAGCT TATGCTCCCT 002560
002561 ATCTTTTTCT TCTTCTCTTT TCACTTCTAC CACTTCCTAG ACTTCAATGA AATTGAACTG TAGCTCACAC AAG
[back to top]

Predicted Small Protein

Name ENST00000415437.1_smProtein_1757:1951
Length 65
Molecular weight 7582.7554
Aromaticity 0.1875
Instability index 45.51875
Isoelectric point 8.57000732422
Runs 11
Runs residual 0.02328125
Runs probability 0.0668449197861
Amino acid sequence MSDLNRWPLSSLPFLTCWGSLSLGDYSYCVLFPWYTLSFLRINREHVLFVFGSPKTCRLE
NLYK
Secondary structure LLLLLLLLLLLLLLLEEEEELLLLLLEEEEELLHHHHHHHHHLLEEEEEEELLLLEEEEE
ELLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLL
LLLL
PiMo oooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiii
iiii