ENST00000417335.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000417335.1 |
Source |
Gencode19 |
Same with |
lnc-PSMG1-7:1,NONHSAT082136 |
Classification |
intergenic |
Length |
1412 nt |
Genomic location |
chr21-:40360633..40378079 |
Exon number |
3 |
Exons |
40360633..40361352,40362753..40362950,40377586..40378079 |
Genome context |
|
Sequence |
000001 GAAACCTGAA GTTGGAAAAC TGGTTGCCTG ACATTCTGTG CAAGACTGAA TCTCTGAGAA ATGAAGGCTG TGTAACTTTG 000080
000081 GGACCATGTC TTTTCCAGCC TACATAGACC CCCAGGAAAC TTTGCAGTTG TTCCCCAAGT ATGGATGGAG TCAAACTTGA 000160 000161 TGTCCTTTCA TCCCCCCATC CCATCCACTA ATCCATATCC TTTGGAAATT TTAGAGTGCC GGGCCTCATG TAAATACACC 000240 000241 AAAAACAATT TAAGTCATTT ATGTTCTACT AAGCCAAGAG TTCTTTAGCG GTGGAAGAAG ATGGGGTCTT ACACGAATGG 000320 000321 AAGGGTCTTG GCTATTTGCG TCGGTATCAA CAGAAGGACT AGACGCTTGC ACTAAAAGAA AAAGCTGAGG GATGGGGGCA 000400 000401 GGAAGCGGGA AGCTGGGACC CAAGCCCCAC CTTCCTGAGT TGGAAGGTGA CAGGTAGACT CCTGCTTGTT TGCCAGAGAG 000480 000481 GCCTGGCAGA GGAGGTGCAT CCCAGCACAG AAGGGCAGCA CAGAGGCAGC CTGAGAAGAT TCTGTCGCTG CCAGGTCACC 000560 000561 AGGACCTCTG GACCACAGCT GGGTTGCGCT GTTTTCCAGT TTGTGAAACT AGGACTTTGG GGAACATCCT GTGAATTGGT 000640 000641 GTCATTTTGA TTTTCCTGGA GGATTTTTGA GGTCAGCGTG ACTGCTGTCA CTAACTAAAA TAAAATCCGA AGTCCCCAAG 000720 000721 TGACTGAACA GACCCCCTCT TGGCCAAGGG GACCCCAGAG AAACCTGAAA GCTGAGCTCC CAGCCATGAG GGGACGGGCG 000800 000801 ATCGGACACG CTTCATCACA GTCCCTCCCC TTTGTGGTTT AAACGACGAT GATCGGCTGT CATGCTAAAA TAGAGACACG 000880 000881 AGACCGACAG CACAGACTCC TTATGGCAAT AAGACACCAA ATTATAAGCA GCACCTCAGG CCACGCCAGG TAAGGGTCGA 000960 000961 GCCGCGCACT CTACACTTAG AGAACGGACT CTGCTCTCAC ACCACAGCGT CTTCTTTTTC TTCAGCAGCT AAACACGCAC 001040 001041 CGGCCCCGAG ATTCAAACGA CTGCAGCTCA TCCACCTGCA GACGCTGGCT GACCCCGTTC CACAGCTGTG ACTATAGCTT 001120 001121 TGATTGGACA AGAGGTTGAT TTCAGTCTCC TGGTAAGAGA CCACCAACCA TAGACCTGGT TCAGGCTGAT TATAGAAGCT 001200 001201 GCACACTTGT ATGCCTTCGA GTCCCTGCCT CACCTTTTGA CGTGTAGGGA CTCATTGTAA TGCTTTTAAA TGTGAAGCCT 001280 001281 CCACCCCAAA GTGAACATGG GACGCATGTA ACGTGCATGT TCAGTGGGCA CGGCTCAGGA CTCTCTTTGT GAATATTCAT 001360 001361 AGCTCCTCCT GGAACCTGAA TATGTATGTT TGGCCAGCTC AATTCAGCAT GA |
Predicted Small Protein
Name | ENST00000417335.1_smProtein_848:952 |
Length | 35 |
Molecular weight | 3924.5472 |
Aromaticity | 0.0 |
Instability index | 48.1264705882 |
Isoelectric point | 11.4196166992 |
Runs | 5 |
Runs residual | 0.0390915860015 |
Runs probability | 0.048436671966 |
Amino acid sequence | MIGCHAKIETRDRQHRLLMAIRHQIISSTSGHAR |
Secondary structure | LLLLLLEELLLHHHHHHHHHHHHHHHHLLLLLLL |
PRMN | - |
PiMo | - |