ENST00000418557.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000418557.1

Source

Gencode19

Same with

lnc-TOMM20-2:4

Classification

intergenic

Length

889 nt

Genomic location

chr1-:235093089..235099746

Exon number

4

Exons

235093089..235093268,235093426..235093825,235095588..235095663,235099514..235099746

Genome context

Sequence
000001 AACCTCATAG GTGGTTTGGG ATGTCTTTTG GCTGTGCTTA AAAATTTCCA ACAGATTTGC TACACATCTT AGGATAAATA 000080
000081 TGTTTCCTGT GAATTGTGAT GATTTCTTAC AGTACATTTG CAAGCATGTG TATGCATCTG CAGGAAACAT AGCCTGGCTC 000160
000161 TGTGAAGGAA TACTGCTGTG ACCGCAAAAC TGTTTCTGTA GAATTTTCTC CGGTGTGGTC ATCCTGCCTT CAGAGGTTTC 000240
000241 TCCAGGACGT CACCTGTATG AGGTACACAG TGTGATGACA CACTCTGTGC TTTTCCTACT TGTGTCCACG GCTCAAGCCT 000320
000321 GGAAGAAGCC TTAGGACGTG GGGGAAATGT CTAACGTGGA GTCCACCTGC TGAGCAGGAC CGGGTGTGAA GGAAGAAGCT 000400
000401 TTGTTCTGAT TCCTCATGGC CCAGCCACCC CTCGCCTGAG CTGAGCCTGG CCACAGGGCC CGCCTGCAGG AAGGGCTGGC 000480
000481 CCATGGCTTC ACACTGGGCT CAGGCTGCGC TAAGAGCCCC GGGTGAGGAC CTCCAAGCCC AGGAAGCCTC AGTTGGCCAA 000560
000561 AGTGCTAGAT GCGTGTGGTC TGCTTTCATC CCCGCTTCCC TCAGAGCTTG CATTTTCCAA ATTCAAGAGA GGCTCCACCT 000640
000641 TCAAGAAGAC CGGCCTGTCC CTGTTATTTA TGTGTCCCCC TACCATATCT CCCTTTGTTC TGCAGAGCGG CCATACCTGC 000720
000721 CAGCAGCCTG CTCTCCCGGC CATGCTGCGG TTCACAAAAG TCCAGCATTT GGCTAGCTTC CTGGGGGAAT GAATCTTTCA 000800
000801 GAGCCAAACT AATGCTATGC ATGCAGCTTA TGATTTTTTT TTTTTTGTCT TCAACAAAGT GAATACTTAC TTTTTTTTTG 000880
000881 CTCTTTAAA
[back to top]

Predicted Small Protein

Name ENST00000418557.1_smProtein_482:775
Length 98
Molecular weight 10522.8924
Aromaticity 0.0824742268041
Instability index 81.7175257732
Isoelectric point 6.94561767578
Runs 13
Runs residual 0.00248186330661
Runs probability 0.0388827741769
Amino acid sequence MASHWAQAALRAPGEDLQAQEASVGQSARCVWSAFIPASLRACIFQIQERLHLQEDRPVP
VIYVSPYHISLCSAERPYLPAACSPGHAAVHKSPAFG
Secondary structure LLHHHHHHHHHLLLLLHHHHHHHHLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLL
EEEELLLEEEELLLLLLLLLLLLLLLLLEEELLLLLL
PRMN -
PiMo -