ENST00000420071.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000420071.1

Source

Gencode19

Same with

lnc-AL645730.2-1:1

Classification

intronic(AS)

Length

566 nt

Genomic location

chr1+:49723083..49734957

Exon number

4

Exons

49723083..49723149,49731815..49731918,49733754..49733931,49734741..49734957

Genome context

Sequence
000001 AGTTTGCTCT CAGACTGCTG TGCTAGCAAT CAGCGAGACT CCGTGAGCAT AGGACTCTCC TAGCCAGATA CTGCAGTCTG 000080
000081 ACAGAGATGG TAAAAAAAAA ATGGCTTGCA GATTGCACAT TAGAAGATTC CTCTCCCTCA CTGAAAACTT GTGAGAAGGC 000160
000161 AGCCAAAAGA GGTTCTCCTT CCTGCGTGAT GGGAAAGTCA AGGATAATAA ATAGAAAACC AGCCGAGTGG ATGGCTTCAA 000240
000241 TACTAGGCCA ACCTATAATG CACCCCATGA ATGAATTTCC ACCTATACTC ACTTCATGTT TCCCCTGCAC AGAAGTGCTA 000320
000321 CGGAGTTAAT AGGACAGATG AAATAACAGC ATTTGATCAA ATCTAGGGTA GGGTGACAGT GGATGAGACT ACATTGACTA 000400
000401 AAGCCCAATG ATTCCAACTG AATCCATCTT AGACCAACAT ATAGACGGTT GACTTCCAAA TATATGAGAG CACCCAGACA 000480
000481 AGATCAGCAG ATTAATCTAC AGTTGATCAC TAATACAGAA AAACCATCCG GTTGGCCCAT GGACTTAACG AGCATTAATA 000560
000561 AATGTT
[back to top]

Predicted Small Protein

Name ENST00000420071.1_smProtein_86:328
Length 81
Molecular weight 8909.5198
Aromaticity 0.05
Instability index 85.43125
Isoelectric point 9.16741943359
Runs 11
Runs residual 0.00131578947368
Runs probability 0.0416325416325
Amino acid sequence MVKKKWLADCTLEDSSPSLKTCEKAAKRGSPSCVMGKSRIINRKPAEWMASILGQPIMHP
MNEFPPILTSCFPCTEVLRS
Secondary structure LLLLLLLLLLLLLLLLLLHHHHHHHHHLLLLLEEELLLEEELLLHHHHHHHHHLLLLLLL
LLLLLLLLLLLLLLLLEELL
PRMN -
PiMo -