ENST00000421475.2

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000421475.2

Source

Gencode19

Same with

lnc-SERHL2-1:3

Classification

intergenic

Length

684 nt

Genomic location

chr22+:42896631..42906658

Exon number

9

Exons

42896631..42896698,42897631..42897780,42897925..42898038,42898357..42898398,42898755..42898774,42899205..42899279,42901039..42901148,42905034..42905116,42906637..42906658

Genome context

Sequence
000001 GGCAGGCGTG AGGGTGTGAC GGCCGCGCAT TCGCCAGACG AGAGCGATGG CTGAGAACGC CGCACCAGGT CTGATCTCAG 000080
000081 AGCTGAAGCT GGCTGTGCCC TGGGGCCACA TCGCAGCCAA AGCCTGGGGC TCCCTGCAGG GCCCTCCAGT TCTCTGCCTG 000160
000161 CACGGCTGGC TGGACAATGC CAGCTCCTTC GACAGACTCA TCCCTCTTCT CCCGCAAGAC TTTTATTACG TTGCCATGGA 000240
000241 TTTCGGAGGT CATGGGCTCT CGTCCCATTA CAGCCCAGGT GTCCCATATT ACCTCCAGAC TTTTGTGAGT GAGATCCGAA 000320
000321 GAGTTGTGGC AGCCTTGAAA TGGAATCGAT TCTCCATTCT GGGCCACAGC TTCGGTGGCG TCGTGGGCGG AATGTTTTTC 000400
000401 TGTACCTTCC CCGAGATGGT GGATAAACTT ATCTTGCTGG ACACGCCGCT CTTTCTCCTG GAATCAGATG AAATGGAGAA 000480
000481 CTTGCTGACC TACAAGCGGA GAGCCATAGA GCACGTGCTG CAGGTAGAGG CCTCCCAGGA GCCCTCGCAC GTGTTCAGCC 000560
000561 TGAAGCAGCT GCTGCAGAGG CAGAGAACAG CATTGACTTC GTCAGCAGGG AGCTGTGTGC GCATTCCATC AGGAAGCTGC 000640
000641 AGGCCCATGT CCTGTTGATC AAAGCAGTCC ACGGATATTT TGAT
[back to top]

Predicted Small Protein

Name ENST00000421475.2_smProtein_176:307
Length 44
Molecular weight 4760.4927
Aromaticity 0.0697674418605
Instability index 79.9209302326
Isoelectric point 10.7366333008
Runs 8
Runs residual 0.0287431408414
Runs probability 0.0235492845787
Amino acid sequence MPAPSTDSSLFSRKTFITLPWISEVMGSRPITAQVSHITSRLL
Secondary structure LLLLLLLLLLLLLLEEEELLHHHHLLLLLLEEEEEEHHHLLLL
PRMN -
PiMo -